SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22190 | AT | Annotation by Michelle Graham. TAIR10: IQ-domain 5 | chr3:7831280-7833512 REVERSE LENGTH=422 | SoyBase | E_val: 3.00E-115 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| PTHR10699 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR10699:SF9 | Panther | CALMODULIN BINDING | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| UniRef100_J7LJM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: IQ-DOMAIN 1-like isoform 3 n=1 Tax=Glycine max RepID=J7LJM0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338E5D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E5D related cluster n=1 Tax=unknown RepID=UPI0002338E5D | SoyBase | E_val: 0 | ISS |
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Glyma09g30780 not represented in the dataset |
Glyma09g30780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g177200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g30780.2 sequence type=transcript gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCATTATCTATTTTATTGTTTTCCACCGAACCCCATTGTGTCTGTTGTGAGAGAGAGAGATGGTTGAGCTTGTGTGAATGAAAACTCGGCATTTGACTCAGTGAGTGGCAGTGACAATCTCTCTTTCTATGAATTTCAGGTTTGTGCTAGAGTGAGATAAAGTGAATTGCAACTCTCACTATGGGTGTCTCAGGGAAGTGGATCAAGGCATTGGTGGCTCGAAAGAAATCAGAAAAGCCAGAGTCATTAGAGAAGGATGGAAATAAGGTTAAGGCTAGCAAGTTACACCATCAGGGAAAGCCTGCTGTCGAGTTTGATAATGGTAATCTTCCAAACGAATTTGATAATGATGCTACTCAACCTATCGGAGATGACAGTGGTCATACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGCACATGATGTTGCACATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATCGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGCTTGCAAACAAAGTTCAAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGCATAGGATCTATTGAAGAAATTCAAGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGGGAGAGCCATGGCTTATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAACTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTTGTTGACATTAATCTGAGGGATGGAGTAATAATACATGAAAATGGGGCTAAGGGTGGTCAAAATGGAACAACACATCAATCAAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTAAGTCTGAGAACTGGTTCCATTCTTTCTGATGGCTGTGATTCTTCACCTACACTTAGTAAGTCAGCAGGTTTGCCAGAATCATCAGACACACAGCCTGTTAAGCCAAATTCTAAGGCAAATGTTGAAAATTCTGTTGAAGAAACATATTCAAAACCTGGAATTGAGTCAAGATCTCATTCAAATCCAAAGGAGAGAACATCTCAGGCAGATAAGCAGGCAAAAAAGCGATTATCTCTGCCTAACAATGGGGGTGGTCCTGGATCTCAAACTGCCAAACATCCTATTGGAACTAGTGTGAAAGGGACGCTAAGCACGCAAAAACCTAGCAGGGATAAGCGTAAGCTCAATAGAGGAAAGGATGTGAATATTTCAAAATCAGTTCCATAGCTCAATCAAAGAAAGGATGTGAATAATACATGGTATGCATTTTCGAGAATCCCAAATCATGGAAATTATTCTATTCTCCAATGATATATGTGTCATTTTGTACATATAAATATAATGTCAAGCGGGGAGGGCTTTGTACTGACTACTTCATCCATTTAGACGCTGATAATGTCAATAGAGGAAAGACTGATGCTTGGTTTGGTTTGAGAAAATATTCTCTGTTTTCATTTTTTTTTTTCATTTTCAAGTTTTCATATTTTAGAAAATGTTTGTTTTTCATTTTCTACTTTTTATCTTTAT >Glyma09g30780.3 sequence type=transcript gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCATTATCTATTTTATTGTTTTCCACCGAACCCCATTGTGTCTGTTGTGAGAGAGAGAGATGGTTGAGCTTGTGTGAATGAAAACTCGGCATTTGACTCAGTGAGTGGCAGTGACAATCTCTCTTTCTATGAATTTCAGGTTTGTGCTAGAGTGAGATAAAGTGAATTGCAACTCTCACTATGGGTGTCTCAGGGAAGTGGATCAAGGCATTGGTGGCTCGAAAGAAATCAGAAAAGCCAGAGTCATTAGAGAAGGATGGAAATGTTAAGGCTAGCAAGTTACACCATCAGGGAAAGCCTGCTGTCGAGTTTGATAATGGTAATCTTCCAAACGAATTTGATAATGATGCTACTCAACCTATCGGAGATGACAGTGGTCATACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGCACATGATGTTGCACATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATCGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGCTTGCAAACAAAGTTCAAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGCATAGGATCTATTGAAGAAATTCAAGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGGGAGAGCCATGGCTTATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAACTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTTGTTGACATTAATCTGAGGGATGGAGTAATAATACATGAAAATGGGGCTAAGGGTGGTCAAAATGGAACAACACATCAATCAAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTAAGTCTGAGAACTGGTTCCATTCTTTCTGATGGCTGTGATTCTTCACCTACACTTAGTAAGTCAGCAGGTTTGCCAGAATCATCAGACACACAGCCTGTTAAGCCAAATTCTAAGGCAAATGTTGAAAATTCTGTTGAAGAAACATATTCAAAACCTGGAATTGAGTCAAGATCTCATTCAAATCCAAAGGAGAGAACATCTCAGGCAGATAAGCAGGCAAAAAAGCGATTATCTCTGCCTAACAATGGGGGTGGTCCTGGATCTCAAACTGCCAAACATCCTATTGGAACTAGTGTGAAAGGGACGCTAAGCACGCAAAAACCTAGCAGGGATAAGCGTAAGCTCAATAGAGGAAAGGATGTGAATATTTCAAAATCAGTTCCATAGCTCAATCAAAGAAAGGATGTGAATAATACATGGTATGCATTTTCGAGAATCCCAAATCATGGAAATTATTCTATTCTCCAATGATATATGTGTCATTTTGTACATATAAATATAATGTCAAGCGGGGAGGGCTTTGTACTGACTACTTCATCCATTTAGACGCTGATAATGTCAATAGAGGAAAGACTGATGCTTGGTTTGGTTTGAGAAAATATTCTCTGTTTTCATTTTTTTTTTTCATTTTCAAGTTTTCATATTTTAGAAAATGTTTGTTTTTCATTTTCTACTTTTTATCTTTAT
>Glyma09g30780.1 sequence type=CDS gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTCTCAGGGAAGTGGATCAAGGCATTGGTGGCTCGAAAGAAATCAGAAAAGCCAGAGTCATTAGAGAAGGATGGAAATAAGGTTAAGGCTAGCAAGTTACACCATCAGGGAAAGCCTGCTGTCGAGTTTGATAATGGTAATCTTCCAAACGAATTTGATAATGATGCTACTCAACCTATCGGAGATGACAGTGGTCATACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGCACATGATGTTGCACATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATCGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGCTTGCAAACAAAGTTCAAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGCATAGGATCTATTGAAGAAATTCAAGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGGGAGAGCCATGGCTTATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAACTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTTGTTGACATTAATCTGAGGGATGGAGTAATAATACATGAAAATGGGGCTAAGGGTGGTCAAAATGGAACAACACATCAATCAAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTTTGCCAGAATCATCAGACACACAGCCTGTTAAGCCAAATTCTAAGGCAAATGTTGAAAATTCTGTTGAAGAAACATATTCAAAACCTGGAATTGAGTCAAGATCTCATTCAAATCCAAAGGAGAGAACATCTCAGGCAGATAAGCAGGCAAAAAAGCGATTATCTCTGCCTAACAATGGGGGTGGTCCTGGATCTCAAACTGCCAAACATCCTATTGGAACTAGTGTGA >Glyma09g30780.2 sequence type=CDS gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTCTCAGGGAAGTGGATCAAGGCATTGGTGGCTCGAAAGAAATCAGAAAAGCCAGAGTCATTAGAGAAGGATGGAAATAAGGTTAAGGCTAGCAAGTTACACCATCAGGGAAAGCCTGCTGTCGAGTTTGATAATGGTAATCTTCCAAACGAATTTGATAATGATGCTACTCAACCTATCGGAGATGACAGTGGTCATACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGCACATGATGTTGCACATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATCGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGCTTGCAAACAAAGTTCAAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGCATAGGATCTATTGAAGAAATTCAAGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGGGAGAGCCATGGCTTATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAACTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTTGTTGACATTAATCTGAGGGATGGAGTAATAATACATGAAAATGGGGCTAAGGGTGGTCAAAATGGAACAACACATCAATCAAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTAAGTCTGAGAACTGGTTCCATTCTTTCTGATGGCTGTGATTCTTCACCTACACTTAGTAAGTCAGCAGGTTTGCCAGAATCATCAGACACACAGCCTGTTAAGCCAAATTCTAAGGCAAATGTTGAAAATTCTGTTGAAGAAACATATTCAAAACCTGGAATTGAGTCAAGATCTCATTCAAATCCAAAGGAGAGAACATCTCAGGCAGATAAGCAGGCAAAAAAGCGATTATCTCTGCCTAACAATGGGGGTGGTCCTGGATCTCAAACTGCCAAACATCCTATTGGAACTAGTGTGAAAGGGACGCTAAGCACGCAAAAACCTAGCAGGGATAAGCGTAAGCTCAATAGAGGAAAGGATGTGAATATTTCAAAATCAGTTCCATAG >Glyma09g30780.3 sequence type=CDS gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTCTCAGGGAAGTGGATCAAGGCATTGGTGGCTCGAAAGAAATCAGAAAAGCCAGAGTCATTAGAGAAGGATGGAAATGTTAAGGCTAGCAAGTTACACCATCAGGGAAAGCCTGCTGTCGAGTTTGATAATGGTAATCTTCCAAACGAATTTGATAATGATGCTACTCAACCTATCGGAGATGACAGTGGTCATACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGCACATGATGTTGCACATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATCGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGCTTGCAAACAAAGTTCAAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGCATAGGATCTATTGAAGAAATTCAAGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGGGAGAGCCATGGCTTATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAACTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTTGTTGACATTAATCTGAGGGATGGAGTAATAATACATGAAAATGGGGCTAAGGGTGGTCAAAATGGAACAACACATCAATCAAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTAAGTCTGAGAACTGGTTCCATTCTTTCTGATGGCTGTGATTCTTCACCTACACTTAGTAAGTCAGCAGGTTTGCCAGAATCATCAGACACACAGCCTGTTAAGCCAAATTCTAAGGCAAATGTTGAAAATTCTGTTGAAGAAACATATTCAAAACCTGGAATTGAGTCAAGATCTCATTCAAATCCAAAGGAGAGAACATCTCAGGCAGATAAGCAGGCAAAAAAGCGATTATCTCTGCCTAACAATGGGGGTGGTCCTGGATCTCAAACTGCCAAACATCCTATTGGAACTAGTGTGAAAGGGACGCTAAGCACGCAAAAACCTAGCAGGGATAAGCGTAAGCTCAATAGAGGAAAGGATGTGAATATTTCAAAATCAGTTCCATAG
>Glyma09g30780.1 sequence type=predicted peptide gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSGKWIKALVARKKSEKPESLEKDGNKVKASKLHHQGKPAVEFDNGNLPNEFDNDATQPIGDDSGHTNIDAHYSPSTSQQAHDVAHNHQMREEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGYAVRKQAAITLRCMQALVRVQARVRARHVRIALETQATQQKLKQKLANKVQVRETEEGWCDSIGSIEEIQAKILKRQEAAAKRGRAMAYALAHQWQAGSRQQPVSSGFEPDKSNWGWNWLERWMAVRPWENRFVDINLRDGVIIHENGAKGGQNGTTHQSRPANKKPLSSNPHLYPVCQNHQTHSLLSQILRQMLKILLKKHIQNLELSQDLIQIQRREHLRQISRQKSDYLCLTMGVVLDLKLPNILLELV* >Glyma09g30780.2 sequence type=predicted peptide gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSGKWIKALVARKKSEKPESLEKDGNKVKASKLHHQGKPAVEFDNGNLPNEFDNDATQPIGDDSGHTNIDAHYSPSTSQQAHDVAHNHQMREEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGYAVRKQAAITLRCMQALVRVQARVRARHVRIALETQATQQKLKQKLANKVQVRETEEGWCDSIGSIEEIQAKILKRQEAAAKRGRAMAYALAHQWQAGSRQQPVSSGFEPDKSNWGWNWLERWMAVRPWENRFVDINLRDGVIIHENGAKGGQNGTTHQSRPANKKPLSSNPHLYPVSLRTGSILSDGCDSSPTLSKSAGLPESSDTQPVKPNSKANVENSVEETYSKPGIESRSHSNPKERTSQADKQAKKRLSLPNNGGGPGSQTAKHPIGTSVKGTLSTQKPSRDKRKLNRGKDVNISKSVP* >Glyma09g30780.3 sequence type=predicted peptide gene model=Glyma09g30780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSGKWIKALVARKKSEKPESLEKDGNVKASKLHHQGKPAVEFDNGNLPNEFDNDATQPIGDDSGHTNIDAHYSPSTSQQAHDVAHNHQMREEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGYAVRKQAAITLRCMQALVRVQARVRARHVRIALETQATQQKLKQKLANKVQVRETEEGWCDSIGSIEEIQAKILKRQEAAAKRGRAMAYALAHQWQAGSRQQPVSSGFEPDKSNWGWNWLERWMAVRPWENRFVDINLRDGVIIHENGAKGGQNGTTHQSRPANKKPLSSNPHLYPVSLRTGSILSDGCDSSPTLSKSAGLPESSDTQPVKPNSKANVENSVEETYSKPGIESRSHSNPKERTSQADKQAKKRLSLPNNGGGPGSQTAKHPIGTSVKGTLSTQKPSRDKRKLNRGKDVNISKSVP*
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