SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48550 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar protein sorting-associated protein 26 | chr1:17950792-17952645 REVERSE LENGTH=327 | SoyBase | E_val: 2.00E-169 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuolar transport | SoyBase | N/A | ISS |
| GO:0042147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0030904 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: retromer complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2717 | KOG | Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 | JGI | ISS | |
| PTHR12233 | Panther | VACUOLAR PROTEIN SORTING 26 RELATED | JGI | ISS | |
| PTHR12233:SF2 | Panther | DOWN SYNDROME CRITICAL REGION PROTEIN 3 | JGI | ISS | |
| PF03643 | PFAM | Vacuolar protein sorting-associated protein 26 | JGI | ISS | |
| UniRef100_G7KPT8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Down syndrome critical region protein-like protein n=1 Tax=Medicago truncatula RepID=G7KPT8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L454 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L454_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g30660 not represented in the dataset |
Glyma09g30660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g176200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g30660.1 sequence type=CDS gene model=Glyma09g30660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTTGCCAGCCATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGAAAAATCGTTGTCAAAACTCAGTCTTCAATCTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTCAACTTGCAGGTTCGTGGAGGATCAGCTGGGGTTGTTGAATCATTCTACGGTGTTATTAAGCCCATCCCTATTGTGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCTGGTACATCAGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAACATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAACTCATTGTTGAAAGTGATAAAGCTGATCTTCTTCAAAGACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTGTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCAATTGATCTTCAGTTGTTTCGAGTTGAGTCCATTCTTCTCGGGGAGAAAATTGTGACCGAAACCTCTCTGGTTCAAACAACACAGGCAAGTGATGCTGGATTTATAGCAGATGGAGATGTGTGCCGCAATATGACGCTGCCTATTTATGTAATAGTACCGCGCCTTTTGACCTGTCCAACAACTTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATTGTTATAAGCTTTCAGTCAGAGCTAAGTAAATTGCACAAAAAATCCGACCCCAAAACTCCGAGACTCTGGCTGGCAATGGAAACATTACCGCTAGAGTTGATTCGGACAAAGTAA
>Glyma09g30660.1 sequence type=predicted peptide gene model=Glyma09g30660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DLPAMSVELKLSRSNRIYRPSEALEGKIVVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFYGVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQRDENLERFYETFHGANISIQYLATVDISRGYLHKSLSATMELIVESDKADLLQRPLSPEMAIFYITQDTQRHPLLPELKSGGFRVTGKICTQCSLSGPISGELTVETSAVPIHSIDLQLFRVESILLGEKIVTETSLVQTTQASDAGFIADGDVCRNMTLPIYVIVPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDPKTPRLWLAMETLPLELIRTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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