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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18000 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491 | SoyBase | E_val: 0 | ISS |
| GO:0006656 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
| GO:0042425 | GO-bp | Annotation by Michelle Graham. GO Biological Process: choline biosynthetic process | SoyBase | N/A | ISS |
| GO:0048528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic root development | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoethanolamine N-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG1269 | KOG | SAM-dependent methyltransferases | JGI | ISS | |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF328 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08241 | PFAM | Methyltransferase domain | JGI | ISS | |
| UniRef100_G7KPT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoethanolamine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7KPT7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L451 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1L451_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g30650 not represented in the dataset |
Glyma09g30650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g11580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g30650.4 sequence type=transcript gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATAGTATTGAGCTCATAACTCATAACAAGCCATTTCTTTCGTCTTAATTTGTTCTCTTCAGCCATGGCGATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGGTATGTTTTGTCATTTTCCTTTCTCTCTTATGCAATAGAGACTATTCCTTTCATTAAGATAGGGATCCATGGAAGAATGATCTTTCTCAATAATTATGTCCTCTTATAATCTTACCTGAGCCATAGAGTGGATGAAAGGTTTGATGCGTGCTTTGTAAAAGTAACACCAAATCATTATAAAGCTTAAGTGCAGTTAAATATTAATAATGGCTTGGCACAAGGTTTTATGACACTTCCTTTGCCTTTAGCAACATCATGTTTTGGATTCATAAAAGAACAATGGTTGTCTGTGCAATAAACAGATTTGAAATAAAGAAATAAGAAGTCCTATGTTTCCAGCCTTTTA
>Glyma09g30650.1 sequence type=CDS gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGTACTGGATGTTGGTTGTGGTACAGGAGGAGGTGACATTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGGCATTGACCTCTCCATAAACGTGATTTCTCTTGCTATTGAACGTGCTATTGGACTCAAATGCTCGGTAGAATTTGAATGTGCCGATTGCACTAAAAAAACATACCCTGAGAATACATTTGATGTAATCTATTCCCGTGACACATTGTTACACATCAAAGATAAACCACCACTATTCAGATCATTTTACAAATGGTTGAAGCGTGGAGGTACACTTATTATTACTGATTACTGCAAAAGTGAAGGAAGTCCATCATTAGGATATGCTGAGTACATAAAAAAAGGAGGATATCATATCCATGACATGAAAACATATTGTCAGATGCTTGAGAATGCCGGATTTGATGACGTTGTTGCCGAGGATCGAACTAATTTGTTCATGAAAACCCTACAGCAGGAGTTAAATGCCCTTGAGAGCAAGAAGGATGATTTCATTGATGAATTCTCGGAGGAAGACTACAATGGAATTACTGAAAGATGGAAGGCCAAGCAGATGCGGGGTGCAGATGGTGAACAAATATGGGGCTTGTTCGTTGCCAAGAAAGAATAA >Glyma09g30650.4 sequence type=CDS gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGGTATGTTTTGTCATTTTCCTTTCTCTCTTATGCAATAG
>Glyma09g30650.1 sequence type=predicted peptide gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQDERCVQKSYWIEHTTDLSVESMMLDSNASDLDKEERPEVLSLLPPYEGKSVVELGAGIGRFTVELAKKAGQLLAVDFIESAIKKNESINGHHKNVKFMCADVTSPNLYISEGSVDLIFSNWLLMYLSDKEVENLAARMIKWLKVGGYVFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHISDDTRNSFELSLVGCKCIGAYVRNKKNQNQICWLWKKVRSQDDRGFQRFLDSVEYNHKDILLYESVFGQGFVSTGGLETTKEFVAKLGLKPGQKVLDVGCGTGGGDIYMAENFDVEVVGIDLSINVISLAIERAIGLKCSVEFECADCTKKTYPENTFDVIYSRDTLLHIKDKPPLFRSFYKWLKRGGTLIITDYCKSEGSPSLGYAEYIKKGGYHIHDMKTYCQMLENAGFDDVVAEDRTNLFMKTLQQELNALESKKDDFIDEFSEEDYNGITERWKAKQMRGADGEQIWGLFVAKKE* >Glyma09g30650.4 sequence type=predicted peptide gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMVQDERCVQKSYWIEHTTDLSVESMMLDSNASDLDKEERPEVLSLLPPYEGKSVVELGAGIGRFTVELAKKAGQLLAVDFIESAIKKNESINGHHKNVKFMCADVTSPNLYISEGSVDLIFSNWLLMYLSDKEVENLAARMIKWLKVGGYVFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHISDDTRNSFELSLVGCKCIGAYVRNKKNQNQICWLWKKVRSQDDRGFQRFLDSVEYNHKDILLYESVFGQGFVSTGGLGMFCHFPFSLMQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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