Report for Sequence Feature Glyma09g30650
Feature Type: gene_model
Chromosome: Gm09
Start: 37426876
stop: 37433118
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g30650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18000 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491
SoyBase E_val: 0 ISS
GO:0006656 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine biosynthetic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009555 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen development
SoyBase N/A ISS
GO:0009826 GO-bp
Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0010183 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube guidance
SoyBase N/A ISS
GO:0042425 GO-bp
Annotation by Michelle Graham. GO Biological Process: choline biosynthetic process
SoyBase N/A ISS
GO:0048528 GO-bp
Annotation by Michelle Graham. GO Biological Process: post-embryonic root development
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0000234 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoethanolamine N-methyltransferase activity
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
KOG1269
KOG
SAM-dependent methyltransferases
JGI ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF328 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF08241 PFAM
Methyltransferase domain
JGI ISS
UniRef100_G7KPT7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphoethanolamine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7KPT7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L451 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1L451_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g30650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g30650
Paralog Evidence Comments
Glyma07g11580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g30650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma09g30650
Transcripts of Glyma09g30650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g30650.4 sequence type=transcript gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTATAGTATTGAGCTCATAACTCATAACAAGCCATTTCTTTCGTCTTAATTTGTTCTCTTCAGCCATGGCGATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGGTATGTTTTGTCATTTTCCTTTCTCTCTTATGCAATAGAGACTATTCCTTTCATTAAGATAGGGATCCATGGAAGAATGATCTTTCTCAATAATTATGTCCTCTTATAATCTTACCTGAGCCATAGAGTGGATGAAAGGTTTGATGCGTGCTTTGTAAAAGTAACACCAAATCATTATAAAGCTTAAGTGCAGTTAAATATTAATAATGGCTTGGCACAAGGTTTTATGACACTTCCTTTGCCTTTAGCAACATCATGTTTTGGATTCATAAAAGAACAATGGTTGTCTGTGCAATAAACAGATTTGAAATAAAGAAATAAGAAGTCCTATGTTTCCAGCCTTTTA
Coding sequences of Glyma09g30650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g30650.1 sequence type=CDS gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGTACTGGATGTTGGTTGTGGTACAGGAGGAGGTGACATTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGGCATTGACCTCTCCATAAACGTGATTTCTCTTGCTATTGAACGTGCTATTGGACTCAAATGCTCGGTAGAATTTGAATGTGCCGATTGCACTAAAAAAACATACCCTGAGAATACATTTGATGTAATCTATTCCCGTGACACATTGTTACACATCAAAGATAAACCACCACTATTCAGATCATTTTACAAATGGTTGAAGCGTGGAGGTACACTTATTATTACTGATTACTGCAAAAGTGAAGGAAGTCCATCATTAGGATATGCTGAGTACATAAAAAAAGGAGGATATCATATCCATGACATGAAAACATATTGTCAGATGCTTGAGAATGCCGGATTTGATGACGTTGTTGCCGAGGATCGAACTAATTTGTTCATGAAAACCCTACAGCAGGAGTTAAATGCCCTTGAGAGCAAGAAGGATGATTTCATTGATGAATTCTCGGAGGAAGACTACAATGGAATTACTGAAAGATGGAAGGCCAAGCAGATGCGGGGTGCAGATGGTGAACAAATATGGGGCTTGTTCGTTGCCAAGAAAGAATAA
>Glyma09g30650.4 sequence type=CDS gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGATGGTGCAAGATGAACGATGCGTTCAGAAAAGCTACTGGATTGAACATACGACGGACTTGTCCGTAGAGTCAATGATGCTCGATTCCAACGCCTCTGATCTCGACAAGGAGGAGAGACCCGAAGTTTTGTCCCTACTACCACCATATGAAGGAAAATCAGTTGTAGAACTTGGAGCAGGTATTGGAAGATTCACAGTTGAATTGGCCAAGAAAGCTGGCCAGTTACTTGCTGTGGATTTCATTGAGAGTGCTATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATAAAGAGGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAAAATACAACCCAACTCACTATAGGGAACCTAGATTTTACACTAAGGTATTTAAAGAGTGCCATATAAGTGATGACACCAGGAATTCCTTTGAACTTTCCCTTGTTGGCTGTAAATGTATTGGAGCTTATGTCCGAAATAAGAAGAATCAAAACCAGATTTGCTGGTTATGGAAAAAAGTTAGATCACAGGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATATTACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGGTATGTTTTGTCATTTTCCTTTCTCTCTTATGCAATAG
Predicted protein sequences of Glyma09g30650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g30650.1 sequence type=predicted peptide gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVQDERCVQKSYWIEHTTDLSVESMMLDSNASDLDKEERPEVLSLLPPYEGKSVVELGAGIGRFTVELAKKAGQLLAVDFIESAIKKNESINGHHKNVKFMCADVTSPNLYISEGSVDLIFSNWLLMYLSDKEVENLAARMIKWLKVGGYVFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHISDDTRNSFELSLVGCKCIGAYVRNKKNQNQICWLWKKVRSQDDRGFQRFLDSVEYNHKDILLYESVFGQGFVSTGGLETTKEFVAKLGLKPGQKVLDVGCGTGGGDIYMAENFDVEVVGIDLSINVISLAIERAIGLKCSVEFECADCTKKTYPENTFDVIYSRDTLLHIKDKPPLFRSFYKWLKRGGTLIITDYCKSEGSPSLGYAEYIKKGGYHIHDMKTYCQMLENAGFDDVVAEDRTNLFMKTLQQELNALESKKDDFIDEFSEEDYNGITERWKAKQMRGADGEQIWGLFVAKKE*
>Glyma09g30650.4 sequence type=predicted peptide gene model=Glyma09g30650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAMVQDERCVQKSYWIEHTTDLSVESMMLDSNASDLDKEERPEVLSLLPPYEGKSVVELGAGIGRFTVELAKKAGQLLAVDFIESAIKKNESINGHHKNVKFMCADVTSPNLYISEGSVDLIFSNWLLMYLSDKEVENLAARMIKWLKVGGYVFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHISDDTRNSFELSLVGCKCIGAYVRNKKNQNQICWLWKKVRSQDDRGFQRFLDSVEYNHKDILLYESVFGQGFVSTGGLGMFCHFPFSLMQ*