SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59960 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326 | SoyBase | E_val: 2.00E-82 | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1577 | KOG | Aldo/keto reductase family proteins | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF34 | Panther | 3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_G7JL30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=1 Tax=Medicago truncatula RepID=G7JL30_MEDTR | SoyBase | E_val: 4.00E-126 | ISS |
| UniRef100_UPI0002338CF3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338CF3 related cluster n=1 Tax=unknown RepID=UPI0002338CF3 | SoyBase | E_val: 0 | ISS |
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Glyma09g29991 not represented in the dataset |
Glyma09g29991 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g34560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g169700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g29991.2 sequence type=transcript gene model=Glyma09g29991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAAACAGTTGACTGTGCACCAGATAACACTTCCATATATACTAACAACATTCAACACATATCAGACCCAACAGAAGATATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGCAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCACCACATGAAGCTCTCACCTCCATCCCTATTGTTGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGGAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCATAGGCCTTAGATCTAGGCCTTATAAAGAGCAGAGATAAAGTATTCATCACATCAAAGCTATGGACCACTGATGCTCACCCTGACCTTGTTGTTCCAACTCTTAAGACTCACTGCAGAAAGTATATTATGTTTAATTACTCATTTGATCCTTATATTAGCACAATCTTTTATGTTTTAGCCCTTACACCTAAAAGCTGTTCGTTTTAGTACCTACACATACACTTTTTATTGTATGTGCAGAAACTAAATCCAAGTAGTTTCTAAATGTGAGGAACTAAAACGTAAAGATCATGCAGTCATAGGAACCAAATGAGTAATTATACCTATTTTGTATATTATCTCTTCTACACTTTGTTTCTCTGGTTGCATGCTATGTAATAGTGTAAGTTTCCTCAAAACTGTTTAGGAAGTTGGGGTTGGAGTATGTAGATCTCTATTTGATTCATTGGCCACTGAGGATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGAAATCATTACTAGTAGCAGCAAAATATCATCAAAATGTGTATCTCTATATTTACTTATGCAACCCAACTCCATGCATTTAAAGGAATAAGATTTGATTAATAACTTATTGGGGGTATGCTGTTCATGTTTTGTTAACTTGTCAAGACGTAATTGAGTAGGATCTAACTATCAAAACATTTGAGCTGAAGGAGATAATAGAAAAGGAAGTCCTGGCATTTAAATAAAAGATCACTTTATATTTTTGTA
>Glyma09g29991.1 sequence type=CDS gene model=Glyma09g29991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGCAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCACCACATGAAGCTCTCACCTCCATCCCTATTGTTGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGGAATTTCCTCAAAACTGTTTAGGAAGTTGGGGTTGGAGTATGTAGATCTCTATTTGATTCATTGGCCACTGAGGATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGA >Glyma09g29991.2 sequence type=CDS gene model=Glyma09g29991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGA
>Glyma09g29991.1 sequence type=predicted peptide gene model=Glyma09g29991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAKKIPEVILNSGQKMPVIGLGTASIPLPPHEALTSIPIVAFEVGYRHFDTASLYGISSKLFRKLGLEYVDLYLIHWPLRMKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLTQLVENATIPPAVNQVEISPAWQQGKLREFCKQKGIHVSAWSPLGAYKSVHGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIAKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMFRGISFVSENGPYKTLEELWDGDP* >Glyma09g29991.2 sequence type=predicted peptide gene model=Glyma09g29991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLTQLVENATIPPAVNQVEISPAWQQGKLREFCKQKGIHVSAWSPLGAYKSVHGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIAKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMFRGISFVSENGPYKTLEELWDGDP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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