Glyma09g29991 - SoyBase

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Report for Sequence Feature Glyma09g29991

Feature Type:	gene_model
Chromosome:	Gm09
Start:	36863142
stop:	36865466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g29991

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59960	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr1:22071410-22073067 REVERSE LENGTH=326	SoyBase	E_val: 2.00E-82	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1577	KOG	Aldo/keto reductase family proteins	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF34	Panther	3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_G7JL30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=1 Tax=Medicago truncatula RepID=G7JL30_MEDTR	SoyBase	E_val: 4.00E-126	ISS
UniRef100_UPI0002338CF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338CF3 related cluster n=1 Tax=unknown RepID=UPI0002338CF3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g29991

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g29991 not represented in the dataset	Glyma09g29991 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g29991

Paralog	Evidence	Comments
Glyma16g34560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g29991 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g169700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g29991

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g29991

Limit To All Plant Sequences

>Glyma09g29991.2   sequence type=transcript   gene model=Glyma09g29991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAACAGTTGACTGTGCACCAGATAACACTTCCATATATACTAACAACATTCAACACATATCAGACCCAACAGAAGATATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGCAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCACCACATGAAGCTCTCACCTCCATCCCTATTGTTGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGGAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCATAGGCCTTAGATCTAGGCCTTATAAAGAGCAGAGATAAAGTATTCATCACATCAAAGCTATGGACCACTGATGCTCACCCTGACCTTGTTGTTCCAACTCTTAAGACTCACTGCAGAAAGTATATTATGTTTAATTACTCATTTGATCCTTATATTAGCACAATCTTTTATGTTTTAGCCCTTACACCTAAAAGCTGTTCGTTTTAGTACCTACACATACACTTTTTATTGTATGTGCAGAAACTAAATCCAAGTAGTTTCTAAATGTGAGGAACTAAAACGTAAAGATCATGCAGTCATAGGAACCAAATGAGTAATTATACCTATTTTGTATATTATCTCTTCTACACTTTGTTTCTCTGGTTGCATGCTATGTAATAGTGTAAGTTTCCTCAAAACTGTTTAGGAAGTTGGGGTTGGAGTATGTAGATCTCTATTTGATTCATTGGCCACTGAGGATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGAAATCATTACTAGTAGCAGCAAAATATCATCAAAATGTGTATCTCTATATTTACTTATGCAACCCAACTCCATGCATTTAAAGGAATAAGATTTGATTAATAACTTATTGGGGGTATGCTGTTCATGTTTTGTTAACTTGTCAAGACGTAATTGAGTAGGATCTAACTATCAAAACATTTGAGCTGAAGGAGATAATAGAAAAGGAAGTCCTGGCATTTAAATAAAAGATCACTTTATATTTTTGTA

Coding sequences of Glyma09g29991

Limit To All Plant Sequences

>Glyma09g29991.1   sequence type=CDS   gene model=Glyma09g29991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGCAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCACCACATGAAGCTCTCACCTCCATCCCTATTGTTGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGGAATTTCCTCAAAACTGTTTAGGAAGTTGGGGTTGGAGTATGTAGATCTCTATTTGATTCATTGGCCACTGAGGATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGA

>Glyma09g29991.2   sequence type=CDS   gene model=Glyma09g29991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAAGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCCATTGGTGTTAGCAACTTCGGCATCAAAAAGCTCACCCAGCTCGTGGAAAATGCAACCATCCCTCCTGCAGTCAATCAGGTGGAAATAAGCCCAGCATGGCAGCAGGGGAAACTCAGAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGTCCATGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATAGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGCGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAGGAGGAATCACAGAAATTCAGCCAGATTCCACAACGTAGGATGTTTCGTGGAATAAGTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATGGAGACCCCTGA

Predicted protein sequences of Glyma09g29991

Limit To All Plant Sequences

>Glyma09g29991.1   sequence type=predicted peptide   gene model=Glyma09g29991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKKIPEVILNSGQKMPVIGLGTASIPLPPHEALTSIPIVAFEVGYRHFDTASLYGISSKLFRKLGLEYVDLYLIHWPLRMKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLTQLVENATIPPAVNQVEISPAWQQGKLREFCKQKGIHVSAWSPLGAYKSVHGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIAKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMFRGISFVSENGPYKTLEELWDGDP*

>Glyma09g29991.2   sequence type=predicted peptide   gene model=Glyma09g29991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLTQLVENATIPPAVNQVEISPAWQQGKLREFCKQKGIHVSAWSPLGAYKSVHGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIAKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMFRGISFVSENGPYKTLEELWDGDP*

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