SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17760 | AT | Annotation by Michelle Graham. TAIR10: glutamate decarboxylase 5 | chr3:6078893-6080838 REVERSE LENGTH=494 | SoyBase | E_val: 0 | ISS |
| GO:0006536 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process | SoyBase | N/A | ISS |
| GO:0006540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate decarboxylation to succinate | SoyBase | N/A | ISS |
| GO:0019752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1383 | KOG | Glutamate decarboxylase/sphingosine phosphate lyase | JGI | ISS | |
| PTHR11999 | Panther | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | JGI | ISS | |
| PTHR11999:SF1 | Panther | SEX HORMONE-BINDING GLOBULIN | JGI | ISS | |
| PF00282 | PFAM | Pyridoxal-dependent decarboxylase conserved domain | JGI | ISS | |
| UniRef100_I1L3Z2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3Z2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P54767 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase n=1 Tax=Solanum lycopersicum RepID=DCE_SOLLC | SoyBase | E_val: 0 | ISS |
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Glyma09g29900 not represented in the dataset |
Glyma09g29900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g34450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g168900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g29900.1 sequence type=CDS gene model=Glyma09g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTCACATCCACTGCCACTCACCCAGATGAAAAAGACCAGAGCCTAAACTCTACTTTTGCTTCCAGATATGTGCGTGATCCTATTCCAAAATTCAAGATGCCAGAGAAATCAATACCAAAGGATGCAGCTTTTCAGATAATAAACGATGAGTTGATGTTGGATGGTGCACCAAGGCTCAACTTGGCTTCGTTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAAAACTATGTTGATATGGATGAGTATCCTGTCACCACTGAGCTCCAGAACCGTTGTGTTAATATAATAGCAAATCTATTCCATGCTCCTATAAGTGAAGAGGAGACTGCAGTAGGTGTGGGAACTGTGGGGTCATCAGAGGCAATAATGTTGGCAGGTCTTGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCATATGATAAGCCCAATATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTAGAGCTCAAGGAAGTGAAACTCAAAGAGGGATACTATGTGATGGACCCTGCGAAAGCTGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGATCAACTATGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAATGAACTTCTCACTGAAAAGAACAAGGAGACAGGTTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGGTTTATTGCCCCATTTCTATATCCTGATTTAGAGTGGGACTTCCGTTTGCCGTTGGTGAAAAGCATCAATGTTAGTGGCCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTCTGGAGGAGCAAAGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTGAGGGTTACAAAAATATCATGGAAAATTGCTTGGAGAATGCAAGAGTTTTGAAGGAAGGAATTGAGAGAACAGGGCGGTTTAACATCATCTCAAAGGATATTGGCGTGCCACTTGTAGCCTTTTCCTTGAAAGACAGTAGCCAACACACGGTGTTTGAGATAGCAGACCATCTGAGAAAATTCGGGTGGATAGTTCCGGCCTATACAATGCCACCGGACGCGCAACACATAGCGGTCCTCCGGGTGGTGATCAGGGAGGATTTCAGCCGTGGCTTGGCCGAGAGACTTGCTGCTGACATAGAGAAGGTTGTGAAGCTCTTGGACACACTTCCTAGCCCCCTCACTACCAAAGTTGCTCATATCACAGCCATCACTAGTGAGACTAGTGAGAAGGTTAAGAGTGCAATAGAGACTCAGAAAGAGATTGCTTTGTACTGGAAGCGACTTGTGGATGGCAAGAGACTTGGAGCATGTTAG
>Glyma09g29900.1 sequence type=predicted peptide gene model=Glyma09g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLTSTATHPDEKDQSLNSTFASRYVRDPIPKFKMPEKSIPKDAAFQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIANLFHAPISEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLTEKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNIMENCLENARVLKEGIERTGRFNIISKDIGVPLVAFSLKDSSQHTVFEIADHLRKFGWIVPAYTMPPDAQHIAVLRVVIREDFSRGLAERLAADIEKVVKLLDTLPSPLTTKVAHITAITSETSEKVKSAIETQKEIALYWKRLVDGKRLGAC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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