Glyma09g29890 - SoyBase

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Report for Sequence Feature Glyma09g29890

Feature Type:	gene_model
Chromosome:	Gm09
Start:	36783137
stop:	36784942
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g29890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20230	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr1:7009570-7011852 FORWARD LENGTH=760	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF83	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7KIA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KIA6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1L3Z1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3Z1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g29890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g29890

Paralog	Evidence	Comments
Glyma16g34430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g29890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g168800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g29890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g29890

Limit To All Plant Sequences

>Glyma09g29890.1   sequence type=CDS   gene model=Glyma09g29890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCTCAAATGCGACCGAATCCGGGATGCCCGGAAACTGTTTGATATGATGCCTGAGAGGGATGTGGTTGTCTGGAGTGCCATGGTTGCCGGCTACTCGCGCCTCGGCCTCGTGGACGAGGCCAAGGAGTTTTTTGGGGAGATGCGGAGTGGTGGGATGGCGCCCAATTTGGTATCGTGGAATGGCATGCTTGCTGGGTTTGGGAACAACGGGTTGTACGATGTGGCGCTGGGGATGTTTCGGATGATGTTGGTGGATGGGTTTTGGCCTGACGGGAGTACTGTTTCGTGTGTGCTTCCTTCTGTGGGGTGCTTGGAGGATGCGGTCGTGGGGGCTCAGGTTCATGGTTATGTGATCAAGCAGGGGTTGGGGTGTGACAAGTTTGTGGTTAGTGCCATGCTTGATATGTATGGGAAATGTGGCTGTGTCAAGGAGATGAGTCGGGTGTTTGATGAGGTGGAGGAAATGGAAATTGGGTCGTTGAATGCTTTTCTTACTGGGTTGTCGCGGAATGGTATGGTTGATGCCGCGTTGGAGGTGTTTAACAAGTTTAAGGACCGGAAAATGGAGTTGAATGTTGTGACGTGGACGTCGATAATTGCTAGCTGTTCGCAAAACGGGAAGGATTTGGAGGCTTTGGAGCTTTTTAGAGATATGCAGGCTGATGGGGTGGAGCCTAATGCTGTGACAATCCCGAGCTTGATTCCTGCTTGTGGGAATATTTCGGCGTTGATGCACGGGAAGGAAATTCATTGCTTTTCTCTCAGAAGGGGGATTTTTGATGATGTATATGTAGGTAGTGCATTGATAGACATGTATGCCAAGTGTGGGAGAATTCAGTTGTCCCGGTGTTGTTTTGATAAGATGTCGGCCCCGAATTTGGTTTCATGGAATGCTGTTATGAGTGGGTATGCAATGCACGGGAAGGCTAAGGAAACCATGGAAATGTTTCATATGATGCTGCAGAGTGGCCAGAAGCCTAATTTGGTTACATTCACATGTGTTTTATCAGCATGCGCGCAAAATGGCCTGACAGAAGAAGGGTGGCGCTATTATAATAGTATGTCCGAAGAACATGGCTTTGAGCCTAAAATGGAACATTATGCTTGCATGGTGACACTTCTCAGCCGTGTTGGAAAACTTGAAGAGGCTTACTCTATCATTAAGGAAATGCCATTTGAACCCGATGCATGTGTACGGGGAGCCTTGCTAAGTTCTTGCAGAGTTCACAATAATTTGAGTTTAGGCGAGATTACTGCAGAGAAGCTTTTCCTGTTAGAACCAACCAACCCTGGGAACTATATTATTCTGTCCAATATCTATGCTTCAAAGGGCTTGTGGGATGAAGAAAATAGAATACGTGAAGTGATGAAAAGTAAGGGATTGAGGAAAAACCCAGGCTATAGTTGGATTGAAGTTGGACACAAAATACACATGCTTCTTGCTGGTGACCAATCACATCCACAAATGAAAGATATTTTGGAGAAGTTGGATAAATTGAATATGGAGATGAAAAAGTCTGGTTACCTCCCTAAGTCTAACTTTGTGTGGCAAGATGTGGAGGAACATGATAAGGAGCAGATATTGTGTGGGCACAGTGAGAAGTTGGCAGTAGTATTAGGACTACTCAACACAAGTCCAGGACAACCTCTTCAAGTGATTAAGAACCTGAGAATCTGTGATGACTGCCATGCTGTGATTAAAGTAATAAGCAGATTGGAAGGAAGAGAAATTTATGTAAGGGACACAAATCGTTTACACCATTTCAAAGACGGAGTTTGTTCTTGTGGAGATTTTTGGTAA

Predicted protein sequences of Glyma09g29890

Limit To All Plant Sequences

>Glyma09g29890.1   sequence type=predicted peptide   gene model=Glyma09g29890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLKCDRIRDARKLFDMMPERDVVVWSAMVAGYSRLGLVDEAKEFFGEMRSGGMAPNLVSWNGMLAGFGNNGLYDVALGMFRMMLVDGFWPDGSTVSCVLPSVGCLEDAVVGAQVHGYVIKQGLGCDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDAALEVFNKFKDRKMELNVVTWTSIIASCSQNGKDLEALELFRDMQADGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLSRCCFDKMSAPNLVSWNAVMSGYAMHGKAKETMEMFHMMLQSGQKPNLVTFTCVLSACAQNGLTEEGWRYYNSMSEEHGFEPKMEHYACMVTLLSRVGKLEEAYSIIKEMPFEPDACVRGALLSSCRVHNNLSLGEITAEKLFLLEPTNPGNYIILSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKIHMLLAGDQSHPQMKDILEKLDKLNMEMKKSGYLPKSNFVWQDVEEHDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRLHHFKDGVCSCGDFW*

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