Glyma09g29553 - SoyBase

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Report for Sequence Feature Glyma09g29553

Feature Type:	gene_model
Chromosome:	Gm09
Start:	36396647
stop:	36400530
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g29553

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17660	AT	Annotation by Michelle Graham. TAIR10: ARF-GAP domain 15 \| chr3:6037717-6039092 FORWARD LENGTH=232	SoyBase	E_val: 2.00E-78	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0703	KOG	Predicted GTPase-activating protein	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF31	Panther	ARF-LIKE	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_G7KLP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD4 n=1 Tax=Medicago truncatula RepID=G7KLP2_MEDTR	SoyBase	E_val: 2.00E-124	ISS
UniRef100_UPI0002338B7F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B7F related cluster n=1 Tax=unknown RepID=UPI0002338B7F	SoyBase	E_val: 2.00E-180	ISS

Expression Patterns of Glyma09g29553

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g29553 not represented in the dataset	Glyma09g29553 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g29553

Paralog	Evidence	Comments
Glyma16g34131	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g29553 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g165700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g29553

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g29553

Limit To All Plant Sequences

>Glyma09g29553.2   sequence type=transcript   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGTGTCAGTTCCATCCCCAACAGGGTTTCCCTTTGAACTTGCGGAACCACAAAACAAAAACAAAAACAAATCAACGAACAAGTTGAAATTTCAAGACCCTCTTTTGAACCATATTTTCTCCACCCACTTACTTTCTTTCTTTGCTCTTCCTTCGCTTTGACTCAACAGCAAGAAACGCGGTGAAGGTTTTGCAAACATGAGCGGAAAAGCCTCCGTCTCTAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGAAAAGGCTTATGAGGTGTATGTTTGTAGATTGTTGAGCTAGCATTTCGCATAGATGTCACAACATTATAGTTGCAGATGATCTTGCAATGTCGGATGAACTTTGAGCTGCATTGGTTTAGGGACAAAGATCTCAATCAAAGCACACTGCAGCAGGATATAAATTTGGAGCACATCTGCACCACTTTGGCGTTGATGTATCACACAGCCTGAAATTGTTCATAAGATGGTTTGATTGCACTGTAGCTCCTATTACAGCCATTGATTGAGATTAACAAAAGGGCTCAAGGGAATTAAATAACAGTTATTCTTTTCTTCTTTCAGTGTTAATTCAAGAGTCTGTGACTGAAGACGTCATATGCCCCAGCCTAAGTTTGTTCTTTTTCTAGTGCACCTTTTTCTTTTATTCATCAGTCAAAATACATAGAGAATGTTAACTTTCTGTTGTGAATTTTGGGTTTGCTTAACAAAGGTTGACATGATCAGAAGTTTTATCTTAAACT

>Glyma09g29553.3   sequence type=transcript   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCCCTTTTATACTTACTTTTAACTTTTCCTTTTCATTCACTTTCCTGTTCAATATCCTTTGATTTCGGGGATCAACTTGGGTTTTAGCATTGATGGTTAACTTGGGAATGTTGAGGTTTTTTCATGGTTTATAAGCACATACATTTTTAATATTTCAGGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGAAAAGGCTTATGAGGTGTATGTTTGTAGATTGTTGAGCTAGCATTTCGCATAGATGTCACAACATTATAGTTGCAGATGATCTTGCAATGTCGGATGAACTTTGAGCTGCATTGGTTTAGGGACAAAGATCTCAATCAAAGCACACTGCAGCAGGATATAAATTTGGAGCACATCTGCACCACTTTGGCGTTGATGTATCACACAGCCTGAAATTGTTCATAAGATGGTTTGATTGCACTGTAGCTCCTATTACAGCCATTGATTGAGATTAACAAAAGGG

Coding sequences of Glyma09g29553

Limit To All Plant Sequences

>Glyma09g29553.1   sequence type=CDS   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCTAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

>Glyma09g29553.2   sequence type=CDS   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCTAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

>Glyma09g29553.3   sequence type=CDS   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

Predicted protein sequences of Glyma09g29553

Limit To All Plant Sequences

>Glyma09g29553.1   sequence type=predicted peptide   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNKSPASGAKSAIQNRRLSLEESILVKHMAQIRSPITRSHEGSSDLQKKNSPPPIRRPSASFDFDYSRGKNNGTVDHFGLLSIHDSKQDFSTTPPSWTTFD*

>Glyma09g29553.2   sequence type=predicted peptide   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNKSPASGAKSAIQNRRLSLEESILVKHMAQIRSPITRSHEGSSDLQKKNSPPPIRRPSASFDFDYSRGKNNGTVDHFGLLSIHDSKQDFSTTPPSWTTFD*

>Glyma09g29553.3   sequence type=predicted peptide   gene model=Glyma09g29553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNKSPASGAKSAIQNRRLSLEESILVKHMAQIRSPITRSHEGSSDLQKKNSPPPIRRPSASFDFDYSRGKNNGTVDHFGLLSIHDSKQDFSTTPPSWTTFD*

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