Glyma09g29540 - SoyBase

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Report for Sequence Feature Glyma09g29540

Feature Type:	gene_model
Chromosome:	Gm09
Start:	36390466
stop:	36395388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g29540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66070	AT	Annotation by Michelle Graham. TAIR10: Translation initiation factor eIF3 subunit \| chr1:24596194-24597520 REVERSE LENGTH=226	SoyBase	E_val: 2.00E-79	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4813	KOG	Translation initiation factor eIF3, p35 subunit	JGI		ISS
PTHR21681	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1	JGI		ISS
PF08597	PFAM	Translation initiation factor eIF3 subunit	JGI		ISS
UniRef100_B9S0Q8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S0Q8_RICCO	SoyBase	E_val: 7.00E-86	ISS
UniRef100_I1L3W4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3W4_SOYBN	SoyBase	E_val: 4.00E-160	ISS

Expression Patterns of Glyma09g29540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g29540 not represented in the dataset	Glyma09g29540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g29540

Paralog	Evidence	Comments
Glyma16g34120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g29540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g165600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g29540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g29540

Limit To All Plant Sequences

>Glyma09g29540.1   sequence type=CDS   gene model=Glyma09g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATTGGGAGGATGAGCATATTGCCCCTATTGATCTAACATTGAAAGATCCAGTTAAAACTAATTGGGACGATGAAGATGTGGATGAAAATGATGTGAAGGAATCATGGGAGGATGAAGATGAGCCTGCTCCGGCACCTGCAGCACCTGCTGTGAAAACTACTGTAAAGGCTCCCAAAAAATCTTCTGATAAAGATAATGACAAGAAGGGTAAGACAGTAGAACCAATAAAGGAAGAACCATTAGATCCTGTGGCTGAAAAACTTCGCCAACAAAGATTAATTGAAGAAGCAGATTATAAGGCCACTAAAGAATTGTTCAGTGGGGGAAATGAAAAAGATGAAAAGAACCTTGACACTTTCATACCGAAATCTGAAAGTGATTTCTTGGAGTATGCAGAGCTCATCTCACACAAGCTCCGTGCTTTTGAGAAAAGTTATCATTATATTGGCTTGCTGAAGGCAGTAATGAGACTATCAACGACTTCTCTAAAAGGGGCAGATGCCAAAGATATTGCATCTTCGGTAACTGCCATTGCAAATGAGAAGATAAAGGCAGAAAAAGAAGCCAATGCTGGTAAAAAGAAGATAGGTGGAAAGAAAAAACAACTTAATGTTGATAAACCTGATGAGGATTTTATTCCTGCTGATCGATATGATGCTCTGGATGATTATGATTTCATGTGA

Predicted protein sequences of Glyma09g29540

Limit To All Plant Sequences

>Glyma09g29540.1   sequence type=predicted peptide   gene model=Glyma09g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDWEDEHIAPIDLTLKDPVKTNWDDEDVDENDVKESWEDEDEPAPAPAAPAVKTTVKAPKKSSDKDNDKKGKTVEPIKEEPLDPVAEKLRQQRLIEEADYKATKELFSGGNEKDEKNLDTFIPKSESDFLEYAELISHKLRAFEKSYHYIGLLKAVMRLSTTSLKGADAKDIASSVTAIANEKIKAEKEANAGKKKIGGKKKQLNVDKPDEDFIPADRYDALDDYDFM*

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