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Report for Sequence Feature Glyma09g29510

Feature Type:gene_model
Chromosome:Gm09
Start:36379707
stop:36381039
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54400AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr1:20307667-20308768 FORWARD LENGTH=183 SoyBaseE_val: 3.00E-21ISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF44Panther SUBFAMILY NOT NAMED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_G7L0H2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 15.4 kDa class V heat shock protein n=1 Tax=Medicago truncatula RepID=G7L0H2_MEDTR SoyBaseE_val: 9.00E-20ISS
UniRef100_I1L3W2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3W2_SOYBN SoyBaseE_val: 7.00E-110ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g29510 not represented in the dataset

Glyma09g29510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g165300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g29510.1   sequence type=CDS   gene model=Glyma09g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCAATACTGCTGAAGCTACTCGTAATCGCATGTATGAGGATTTTGAGCCTTATTGCAAATGGCTTACAAAGGATGGACAAGCGACTCTTGAGATTAATTTGAAGGGTTTCAAAAAGGAGCAACTTAAGATTCAAACCTACGACTGGGGGATCCTAACAATTCATGGAGAAAGGCTTGTGGATGCATCCAATGATAAATGGAGCCGTTTCCGTAAAGAAATTAAAATTTCAAAAGGATGTAATATGAATTCAATCCGTGCAAAGTTTTCCCATGGGGTTCTTTTCATTGCAATGCCTAAAGAAGCAGTCATGGAGAAACATTTAATTTGGGGGGTAGAAACAAGAAAGAGAATATCACCCACTAAAGTTGCAATTGGAGTGGTCTTCGTGGTGGCACTTGGGACTTATATAGCTCGAATAGTAAGTAGTGATGCAATAAGAAAGTTGATTAAGTACTAG

>Glyma09g29510.1   sequence type=predicted peptide   gene model=Glyma09g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESNTAEATRNRMYEDFEPYCKWLTKDGQATLEINLKGFKKEQLKIQTYDWGILTIHGERLVDASNDKWSRFRKEIKISKGCNMNSIRAKFSHGVLFIAMPKEAVMEKHLIWGVETRKRISPTKVAIGVVFVVALGTYIARIVSSDAIRKLIKY*







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