SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23370 | AT | Annotation by Michelle Graham. TAIR10: GRAM domain-containing protein / ABA-responsive protein-related | chr5:7863542-7864201 REVERSE LENGTH=219 | SoyBase | E_val: 1.00E-56 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF02893 | PFAM | GRAM domain | JGI | ISS | |
| UniRef100_G7KKC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GEM-like protein n=1 Tax=Medicago truncatula RepID=G7KKC8_MEDTR | SoyBase | E_val: 2.00E-98 | ISS |
| UniRef100_I1L3U7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3U7_SOYBN | SoyBase | E_val: 2.00E-156 | ISS |
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Glyma09g29380 not represented in the dataset |
Glyma09g29380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g164100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g29380.2 sequence type=transcript gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATACATGTATGTATGACTGCAGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGAGGGAGCATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCAATTGTTAAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGAAAAGGTTGCATTTTATAGTGAAAGGCCCATAACCTTCTCTTCTGCGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAGGGAGAATAAAAGAGGTGAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTACATAGAGATAGTGACTGAGGATGATTCTGAATTTTGGTTTGTGGGATTTTTGCGGTATGAGAAAGCTCTCAAGAATCTCAATAAAGCCATTTCCATGGCCAATCAATTCTGAAAGAGGAAAATTATTGTTAGCTTCCTAGATTTTTAGAGATATACATAGTTTTTTTTTTTTTTTTTTTGTAGGTTAAGTTTTGTAATGTGAATATTGAGATGTTTTGCAATCTGATGTTCTAACTTTATGGTTGTTGCCTGTCCTGCAATATTTCATCCCTTATCTCTTGGGGATTAAGAGCTTCTAGAGTTCTAGTGACTAAGCTGTATGCCACAGAAAAAGACATCAGTGTTGTCCATAGTGGGAGGTGGTGAATGCAAAATGGCTTAGAACCGTGTCAAATAGGGACCAAATGTAGAAAATCGGAATACAACAGCTAGCCAATAATGAAGGTCAAGCACATGTAATGCTACATGTAGTGCTATTGAATTTTTTTTATTTTACTTTTTATGTTAGATTCTTAATAGAAGACTTTTTTATGAATAACTTAGAACTAGAAGCGTATATGTTTGTAATTCAAGTCTTGCCACTGTATATGTAATGGAAGAGATTTGGATTTTGGTACCCAAAAAAAAGGGTAGGCTTATGGTACGGTGGAATGGGGTTAAGAGCCTTAGAGTAAGAGAATGGGAAAGAGCTGGAGTGCACTGTGGGAGATCAAGCTCGCACATTCACAATGTGTCCCACAACTTAAAGTGTGCTTGGATTTATGTCCACATAACTCAAATGTGGATCACATAAGTAATTTTTAGTTACTTTTGGTACATCTTGAGGTGAAAATTGTTGGAAGCGCACGTTCA >Glyma09g29380.3 sequence type=transcript gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAAATTCAGACAAGATTCTGTCTTACTAAGCACACCAAATTGTATTTTGATTTATTTATTATAAGAATTATAATACATAGCTTCCCTTGGACGGCTGTTTACAAGAATTGTAGCCAATACAATCCTTGTTAGTATATTTTGAAGAATTCCATTTTTGAATATCAAATTTCTGAAATTACACGCAATTATGAAGTCTTTTGATACCTCTCCGGGGAGATGCTTTTCTTCTCCACAGCATGATGACAATTTACTACACAAAAGCATTTCTGTTGATGCCTATACATACACCAACACAGAAAAGGAAATTGCCACCAAGGGCACAGGAAAAAGCAGAAGTTTTACACATAGGATTCATGACCATGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGAGGGAGCATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCAATTGTTAAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGAAAAGGTTGCATTTTATAGTGAAAGGCCCATAACCTTCTCTTCTGCGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAGGGAGAATAAAAGAGGTGAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTACATAGAGATAGTGACTGAGGATGATTCTGAATTTTGGTTTGTGGGATTTTTGCGGTATGAGAAAGCTCTCAAGAATCTCAATAAAGCCATTTCCATGGCCAATCAATTCTGAAAGAGGAAAATTATTGTTAGCTTCCTAGATTTTTAGAGATATACATAGTTTTTTTTTTTTTTTTTTTGTAGGTTAAGTTTTGTAATGTGAATATTGAGATGTTTTGCAATCTGATGTTCTAACTTTATGGTTGTTGCCTGTCCTGCAATATTTCATCCCTTATCTCTTGGGGATTAAGAGCTTCTAGAGTTCTAGTGACTAAGCTGTATGCCACAGAAAAAGACATCAGTGTTGTCCATAGTGGGAGGTGGTGAATGCAAAATGGCTTAGAACCGTGTCAAATAGGGACCAAATGTAGAAAATCGGAATACAACAGCTAGCCAATAATGAAGGTCAAGCACATGTAATGCTACATGTAGTGCTATTGAATTTTTTTTATTTTACTTTTTATGTTAGATTCTTAATAGAAGACTTTTTTATGAATAACTTAGAACTAGAAGCGTATATGTTTGTAATTCAAGTCTTGCCACTGTATATGTAATGGAAGAGATTTGGATTTTGGTACCCAAAAAAAAGGGTAGGCTTATGGTACGGTGGAATGGGGTTAAGAGCCTTAGAGTAAGAGAATGGGAAAGAGCTGGAGTGCACTGTGGGAGATCAAGCTCGCACATTCACAATGTGTCCCACAACTTAAAGTGTGCTTGGATTTATGTCCACATAACTCAAATGTGGATCACATAAGTAATTTTTAGTTACTTTTGGTACATCTTGAGGTGAAAATTGTTGGAAGCGCACGTTCA
>Glyma09g29380.1 sequence type=CDS gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCTTTTGATACCTCTCCGGGGAGATGCTTTTCTTCTCCACAGCATGATGACAATTTACTACACAAAAGCATTTCTGTTGATGCCTATACATACACCAACACAGCTATTGCAGAAAAGGAAATTGCCACCAAGGGCACAGGAAAAAGCAGAAGTTTTACACATAGGATTCATGACCATGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGAGGGAGCATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCAATTGTTAAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGAAAAGGTTGCATTTTATAGTGAAAGGCCCATAACCTTCTCTTCTGCGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAGGGAGAATAAAAGAGGTGAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTACATAGAGATAGTGACTGAGGATGATTCTGAATTTTGGTTTGTGGGATTTTTGCGGTATGAGAAAGCTCTCAAGAATCTCAATAAAGCCATTTCCATGGCCAATCAATTCTGA >Glyma09g29380.2 sequence type=CDS gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGCAGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGAGGGAGCATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCAATTGTTAAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGAAAAGGTTGCATTTTATAGTGAAAGGCCCATAACCTTCTCTTCTGCGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAGGGAGAATAAAAGAGGTGAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTACATAGAGATAGTGACTGAGGATGATTCTGAATTTTGGTTTGTGGGATTTTTGCGGTATGAGAAAGCTCTCAAGAATCTCAATAAAGCCATTTCCATGGCCAATCAATTCTGA >Glyma09g29380.3 sequence type=CDS gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCTTTTGATACCTCTCCGGGGAGATGCTTTTCTTCTCCACAGCATGATGACAATTTACTACACAAAAGCATTTCTGTTGATGCCTATACATACACCAACACAGAAAAGGAAATTGCCACCAAGGGCACAGGAAAAAGCAGAAGTTTTACACATAGGATTCATGACCATGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGAGGGAGCATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCAATTGTTAAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGAAAAGGTTGCATTTTATAGTGAAAGGCCCATAACCTTCTCTTCTGCGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAGGGAGAATAAAAGAGGTGAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTACATAGAGATAGTGACTGAGGATGATTCTGAATTTTGGTTTGTGGGATTTTTGCGGTATGAGAAAGCTCTCAAGAATCTCAATAAAGCCATTTCCATGGCCAATCAATTCTGA
>Glyma09g29380.1 sequence type=predicted peptide gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSFDTSPGRCFSSPQHDDNLLHKSISVDAYTYTNTAIAEKEIATKGTGKSRSFTHRIHDHVKMGPNLSEILKGKLSLGARIIQEGGRGSIFKSVFGMQEKEQLLKASQCYLYTTAGPIAGILFVSTEKVAFYSERPITFSSATGELVRAPYKVLIPIGRIKEVNESQNVNKAEQKYIEIVTEDDSEFWFVGFLRYEKALKNLNKAISMANQF* >Glyma09g29380.2 sequence type=predicted peptide gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTAVKMGPNLSEILKGKLSLGARIIQEGGRGSIFKSVFGMQEKEQLLKASQCYLYTTAGPIAGILFVSTEKVAFYSERPITFSSATGELVRAPYKVLIPIGRIKEVNESQNVNKAEQKYIEIVTEDDSEFWFVGFLRYEKALKNLNKAISMANQF* >Glyma09g29380.3 sequence type=predicted peptide gene model=Glyma09g29380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSFDTSPGRCFSSPQHDDNLLHKSISVDAYTYTNTEKEIATKGTGKSRSFTHRIHDHVKMGPNLSEILKGKLSLGARIIQEGGRGSIFKSVFGMQEKEQLLKASQCYLYTTAGPIAGILFVSTEKVAFYSERPITFSSATGELVRAPYKVLIPIGRIKEVNESQNVNKAEQKYIEIVTEDDSEFWFVGFLRYEKALKNLNKAISMANQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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