SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63720 | AT | Annotation by Michelle Graham. TAIR10: kokopelli | chr5:25506349-25508017 FORWARD LENGTH=492 | SoyBase | E_val: 3.00E-10 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MQF3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1MQF3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FFP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kokopelli n=2 Tax=Arabidopsis thaliana RepID=Q9FFP2_ARATH | SoyBase | E_val: 1.00E-07 | ISS |
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Glyma09g29133 not represented in the dataset |
Glyma09g29133 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g162200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g29133.1 sequence type=CDS gene model=Glyma09g29133 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTCAGTCCTATACCAGCAGTATAAAGAATATGAATTCTTTTACTTAAGACATCCTTTGAACATGAATACACGCGGGTGTGCAGGATTAAAGTCTCCAGTGGTAGCCAACATTTCTCAGAGATCTGCAACATATCCAAATTGCAGTAAAATGACTTCAGTGAAGGATCTATCGAAGTTTAGCATCTCTGATGATGGAGGAACAAAATGTAACACACTATTCAGTATAGGTGAGGAAAGCAGTATAATGCAACAAAATTCAGTCAAGGAAACAAATCTACCTGATGACAATGACATTTTATCCAACATAGAGAGTAGTCTTCACAAACAACAACATAATGATGTAAATGTTTTATATGGCGATGGCGAGCATGCAAAAGAATCATTACAAATGTTTGATGCAAAAGATGGTGAGCAGAATGAAGCGAATAATATGTCATTACAAATTCATGAAGCTCAAAGCAATTCTAATGTTGCCAGACAGGTTGAACATCCCGATCAGAAGGGTGATTTCTCTGATGATTTGGTTAATGCAATCAAAAGAGTTGAGTCTCGGATTTTGTCTTTCCAACTTTCTTCAAATTTAAGTGATTCCACTAATGCAGGTCATCATACTACACATGAGGCAGCAAATTCAGACAGTCCTGTAATACAGACAAACAATGGGGCTTTAGGAAGTCAGATGAGTGGTGGAAAGTCCCTCTTGGAAGGACATAGTTTGATGAACCAGAAGACATGTAAAGCAAGTTGTGAGGGTGAAAATTCGATTTCAGCAAATGCATTTGTGGAAACCTTTTGTGCTTGGTTGAGAAATCGGAATAGGATTCAAAATTTAGTACAAAACATAGCAATGATAGATAGAGTTAAGTCACTGAACAGTCAAGATAGTGAGTGTATTCATGGTTTGAGGGTCCCTTTGAATCAAGATGATCATACTAAGAAGCATTCCATGTTAGCAAGTAAAACAACTAGGGAAAGTTTGGTCAGAAAAAATCCAGTGGCTTGGTCCAAGACTGATCAAAATCAAAAGGAAATGGGTTCTGAATCTTCCTATGCACACAAGTTTGCAGGATCCAAGTCCGTTATTGCAAGAAGAGAAAAGCCACCACTTCATCAGATGGTAATGAAACCAACTCTATTGGACCAGAGATCAAGTGAGATTAAGGTAAATTCCCATCAACAAAGAGACTCTCTAGTTTTGGGCAGAAGAAGAACTCATAAGACTGATCATCTTGAACCATGGAAAACGAGGGTTCTACCACAAGATCATAAACTGGAGGAGGCAAACTCAAAGTCTGACTCTTCCCGCTTGAGTTCTCGGCAAGGCAGTGCCAATAGTAGTAGTGACTCTGAGGACTACTCCTTGCTAGATGGAACACAATGTCCATCATCAGGACGAATGGTGGATGAAGCATATGAAGGCAGTTCAGAAGAGAGTAACAACTTATATCTCGAGAAGGATGATGGCCCTTCTCGTAGATTTGGCAGAGGACTAAGGAGGCTGAAAAATAAGTTGGGACTAATCTTTCACCACCACCACCATCATGATGATGTTCATGGTCATAGACATACTATTTGGAATCAGTTGCAGAATATGTTCCACCATAAAGACAAGCATGGGGTGACAACAAATAAAGTAGACAAGACAAGGAGAAGGGATGTTGGAAGAGTGTTGCCTTGGAGAAACCAGGTTGGACAGTTTCATAGAATTGCGGAAGGGGTTTTGAGACACATCCAGCATTCAAAGAAACCAAAGCCTTCCAAGCTTGATGGGATGAAACAGTTAAGGAATACCACACATGGACATAGTCAGAAGAAGCCATGCTGGTGGCAAATTCTTCGACCACACCGGAGAGTGAAGCTGAAAAAGAAAGGCCGAGTTAAAATGGGAACCATAAAGGGTGTTAAGTAA
>Glyma09g29133.1 sequence type=predicted peptide gene model=Glyma09g29133 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSVLYQQYKEYEFFYLRHPLNMNTRGCAGLKSPVVANISQRSATYPNCSKMTSVKDLSKFSISDDGGTKCNTLFSIGEESSIMQQNSVKETNLPDDNDILSNIESSLHKQQHNDVNVLYGDGEHAKESLQMFDAKDGEQNEANNMSLQIHEAQSNSNVARQVEHPDQKGDFSDDLVNAIKRVESRILSFQLSSNLSDSTNAGHHTTHEAANSDSPVIQTNNGALGSQMSGGKSLLEGHSLMNQKTCKASCEGENSISANAFVETFCAWLRNRNRIQNLVQNIAMIDRVKSLNSQDSECIHGLRVPLNQDDHTKKHSMLASKTTRESLVRKNPVAWSKTDQNQKEMGSESSYAHKFAGSKSVIARREKPPLHQMVMKPTLLDQRSSEIKVNSHQQRDSLVLGRRRTHKTDHLEPWKTRVLPQDHKLEEANSKSDSSRLSSRQGSANSSSDSEDYSLLDGTQCPSSGRMVDEAYEGSSEESNNLYLEKDDGPSRRFGRGLRRLKNKLGLIFHHHHHHDDVHGHRHTIWNQLQNMFHHKDKHGVTTNKVDKTRRRDVGRVLPWRNQVGQFHRIAEGVLRHIQHSKKPKPSKLDGMKQLRNTTHGHSQKKPCWWQILRPHRRVKLKKKGRVKMGTIKGVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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