SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72900 | AT | Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain-containing protein | chr1:27432216-27433532 FORWARD LENGTH=363 | SoyBase | E_val: 6.00E-21 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0009625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to insect | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PTHR11017 | Panther | LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR11017:SF20 | Panther | DISEASE RESISTANCE PROTEIN | JGI | ISS | |
| PF01582 | PFAM | TIR domain | JGI | ISS | |
| UniRef100_D6PT14 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rj2 protein n=1 Tax=Glycine max RepID=D6PT14_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L3S6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L3S6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g29080 not represented in the dataset |
Glyma09g29080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g29080.1 sequence type=CDS gene model=Glyma09g29080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGAATCTAACTTTCATTGATGATGAGGAGCTTCAGAGCAGAGAGGAAATAACACCAGCACTTCTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAATTATGCTTCTTCCTCATTTTTCTTAGATGAACTTGCCTACATTCTTGAGTGCTTTAAGAGGAAAAATCTGTTGGTTTTGCCAAAAGGTAGTTATGAAGAAGCATTGACTAAGCATCAGGAAAGGTTCAACCACAACATGGAGAAGTTGGAGAATTGGAAGAAGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTCAAACACGGAGATGGATATGAATACGAGTTTATTGGGAGGATTGTTGAGTTGGTCTCCAGCAAGATTAATCATGCTCCTTTACCTGTTGCGGGTTACCCAGTTGGACTAGAGTCACAAGTACTAGAAGTAAAGAAGCTTTCAGATAGAAAAATCAAACAAACATGGGTTACAACATCTTCAAAACATCCTTCTTTGGGAAATACTTGGAGGGAAGGAAGTCAACTTAACAAGTGTAGAACAAGGAGCTTCAATGAAGGTACTCTGGATTCTAGAAAACCTGATTGGTTTGGTCCAGGTAGTAGAGTCATCATCACCTCTCCGGACAAACAACTGCTAGCATTTCATGGGGTTAAAAGAACATATGAGGTGAAGAAGAATGTTTTTCTTGACATTGCTTGTTGCTTTAATAGATATGCCTTGACAGAGGTTGAAGATATACTTTGTGCTCATTATGTTGATTGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTTAGTTGGTATGGTAGAGTTACATTACATGACTTGATTGAGCAGATGGGTAAAGAAATTGTGAGGCAGGAATCACCAAAAGAGCCAGGGAAGCGCAGTAGACTATGGTTACCAGAAGATATAATTCAAGTTTTGGAAGTCAACAAGAAATCATGTCTGGATTTGCCGGGATTTGACAAAGAAGAAATAATAGAATGGAATAGAAAGGTCTTCAAGGAGATGAAAAACCTCAAAACACTTATTATTAGAAATGGTAATTTTTCCAAAGAAGTTCGTGGATCTAAGAATTTTGAATTTGATCGGTGTAAATGCTTAACACAGATACCTAACGTATCTGGTCTCCCAAATTTGGAGGAATTTTCATTTGAACGTTGTCTGAATTTAATTACAGTTCACGATTCAATCGGTTTTCTGGATAAACTTAAAATATTGAGTGCTTTTAGATGCAAAAAGCTTAGGAGTTTTCCACCTATCAAGTTGACCTCTCTTGAAAAACTTATCTTTCATTTTGTTACAGTCTTGAAAGTTTTCCAGAACAGTGCAATGGTTAAGGTGCCAAGTAGCATTATCATGATGCCAGAACTGACTAATACTTCCGCTACGGGATTGAAAGGGTGGAAATGGTTAAAACAGGAAGAGGATGAAGGTAAAATGGGATCAATAGTATCTTCAAAAGTAAAACAGCTTAGCACCTTAAGTTGCAACCTGGATGATGATTTTTTTTCAATAGATTTCACGTGGTTTGCTCATGTGAAGGAATTATACATAGCTGAGAATAATTTCACAATCCTTCCTGAATGCATCAAAGAATGGATTCCACCAAACTTAAAGCATTTCTTTGCAATAAACTGTAAATCATTGACTTCCTCAAGTATAAGCATGTTCCTAAATCAGGTTCTTTGTCTTCTTGTTGCACCTATGCAAGACCAAATTTTTCGTCCCATGGTGTTCATCAATGGCAATGAATGTTCCTCTTATAGTCACCATTACCTGATAGGAATGCACCATGCATATCTTTCTGATCTACGAGAGATAAAATTCAGAAATAGTCCCTATGAGGTGCCTGTCGAAAATGACTGGAACCATCTGAAGGTTACAGGTCCATGTGGTTTAGATACCTATATCCACCCT
>Glyma09g29080.1 sequence type=predicted peptide gene model=Glyma09g29080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GNLTFIDDEELQSREEITPALLKAIQESRIAITVLSINYASSSFFLDELAYILECFKRKNLLVLPKGSYEEALTKHQERFNHNMEKLENWKKALHQVANLSGFHFKHGDGYEYEFIGRIVELVSSKINHAPLPVAGYPVGLESQVLEVKKLSDRKIKQTWVTTSSKHPSLGNTWREGSQLNKCRTRSFNEGTLDSRKPDWFGPGSRVIITSPDKQLLAFHGVKRTYEVKKNVFLDIACCFNRYALTEVEDILCAHYVDCMKYHIGVLVEKSLSWYGRVTLHDLIEQMGKEIVRQESPKEPGKRSRLWLPEDIIQVLEVNKKSCLDLPGFDKEEIIEWNRKVFKEMKNLKTLIIRNGNFSKEVRGSKNFEFDRCKCLTQIPNVSGLPNLEEFSFERCLNLITVHDSIGFLDKLKILSAFRCKKLRSFPPIKLTSLEKLIFHFVTVLKVFQNSAMVKVPSSIIMMPELTNTSATGLKGWKWLKQEEDEGKMGSIVSSKVKQLSTLSCNLDDDFFSIDFTWFAHVKELYIAENNFTILPECIKEWIPPNLKHFFAINCKSLTSSSISMFLNQVLCLLVAPMQDQIFRPMVFINGNECSSYSHHYLIGMHHAYLSDLREIKFRNSPYEVPVENDWNHLKVTGPCGLDTYIHP
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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