SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17820 | AT | Annotation by Michelle Graham. TAIR10: Putative integral membrane protein conserved region (DUF2404) | chr1:6131751-6135115 REVERSE LENGTH=803 | SoyBase | E_val: 0 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| KOG2238 | KOG | Uncharacterized conserved protein TEX2, contains PH domain | JGI | ISS | |
| PTHR13466 | Panther | TEX2 PROTEIN-RELATED | JGI | ISS | |
| PF10296 | PFAM | Putative integral membrane protein conserved region (DUF2404) | JGI | ISS | |
| UniRef100_I1L3R2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3R2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LMU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F2H15.5 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LMU6_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma09g28890 not represented in the dataset |
Glyma09g28890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g160200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28890.1 sequence type=CDS gene model=Glyma09g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTTGTTTTCGCTTTGATTCTCCTCGGGTTTCTTCTTGGGGTGGCGGCGGTTGTAGCTGCCGAAGCTCTGGGATTTTTGTGGGTGATAAAGCGATTGCAAAGCAAGATCAGCAAAGACCAAGCCAAAATCGCGTCGAAAACGCAACTGGGTAGTGCTCAAAGTGATCGTCCCCAACAACAATTGCTAAAAAAGGAGGGCGTGGTTTGGGTTTTGGAGCCTGACAAGGTTTCAAAATTTTGGGTGGAGAAACAGTCGTCAAAGGAGCTGAAGAGGAAAAAGGAAGTGTTGGAGGTGACTCCTGTTAGGAAGTATGGGAAAATCAATGGGCAATCACTTGTGCTTACAGATGCTGATGGCTTTCACACCACCATTCAGCTTAAGGGTTGCTTAGTGGAAGCTGTTTCAGCTACAAGTCTTCCTTCAAAAAAATGGGCGAAAAAGTTCCCCATCAAAGTGGAAGCCAAGACCTCTGTGATCTACCATGGAAGCAAGACTTTTTGCATATATCTTGAGACTGCATGCGAGAAAGAAGCATGGTGTAAGGCCCTCCGTCTGGCTTCTTCTGATAATAAAGAAAAGCATGAGTGGTTTGCCCAGTTGCAAGAAGAGTTTCATAGTTATTTGACATCATTAAATACTGAATATCTTTCTCTCGTGAAACCATCCGTAGGATCAAGTGCTGAGACAATAGAAAAGGCTAGTAAGCCTGATGGTAGTTCCTCAAAGGTTCGTCAATTTTTGAAAAAACTTACAAAAAAAAGTTCCCGAGTTGGTGTGGAAAATAAATCAGCTTGGACTTCATTGTCAGGCCGTGAAGAAAGAAAGAACACTGAGAAGCTTCGTGCTTGTCAAGATGCAGTATTAGCCACTGGTTTGATGAAATCTGCTGCAGCAGCAAACCATCTGAAAAGTCCCTTGTTAGACAATTCCACACCATCATCTTCAACCTTACCTCATTCAGGAAGCCAGAGTCAATTCTCTGTCTGTTCTGATGCTGATGAAAAGTTAGGTACTGATGAAGGAACACTATGTTGGAATTTGTTGGTTTCTCGACTCTTTTTCGATGTCAAAGGAAATGTGCGAATGAAGAAATCCATCCAAGAAAGGATTCAGAGGACATTGGCAAATATGAGAACTCCCAGTTATGTAGGTGAAGTAATCTGTACAGATATCAACATGGGGAATGTTCCACCCTGTATCATTCGAATGAGGGTTCTTCCAATGGAAATGAGTGAGGTGTGTGCCTTAGAGTTTGACATTGAATATTCTGGTGGTGCATTATTAGAGATTGAAACAAGGCTTGAAGTACGTGAACTAGAGCATGAAAGGGGGACAGAGGACTCAAATCCAGAGTCAAGCAATGTTGGCGCTGTCCCATCAGATCTTCTTGAAGGATTTGAATATTTGGGTGAGCAATTGAATCTTGCAGAAGGGATGAATGATTTACTAGAGCCAAAAGGAGATGATATGTCCAAGAGCTTTAAGCACAGTACATCTTCCTCAACTCAAGGATCAAGATGGAAGTCTATGTTAAATTCTGTTGCCAAGCAAGTTTCACAGGTTCCTCTCTCTTTGGCAATAAGGATAGCATCCCTCAAAGGGACATTGCGGTTGCAGATAAAGCCACCTCCGTCTGATCAATTGTGGTTTGGTTTCACATTTATGCCTGATATAGACTTCAGCTTGGAATCATTTGTTGGAGAACACAAGATAACTAATTCACACATAGCTTTGTTCCTGGTCAATCGACTCAAGGCAGCGATCCGGGAAACTTTAGTGCTCCCAAATTGTGAAAGCATATGCATTCCATGGATGCTAGCCGAAAAGGATGATTGGGTTCCTAGGAGTGTCGCTCCGTTCATATGGATCCACCCAGAATCGGGGAACGAGATTTCAACCTCAGTTGATACCAATAATCAACCTTGTGGTGGATTGAAAGCTAGTGCAAGGACCTTAAGTGGTGATGGTCCAGAACTCAAACAACATAAACCGCCAAAGTGTACCAAATCTAGTCAGGAACCAGCTAGGAAATCAGATTCTGTGGCACTTCCACCAATTTCCTCTAGTTCAGTAACATTAAGGAGCAGCAAAAGTTCGGAAGAACTGACAAGACCTCTGTTAGAGAATGACAAACCACAAGAAACTAGAGATTTGCAAGAACTTAGAACTACTTCATTGCAGAATGATAATACTAATGAAGCTAGTGAAGAGAAGATGGGGGATATTTCTGTGAGTGAATCACCTCCCAGAAACGTGGTGATGGATAAACAATATAGTTCAATTGAACAGGATGATTCAAGGCCAAGGAAAATTGGAAAAAGGGAAAGAATTCTTGATTTGAAAAAGAGGATGAGTGAGAAATTGGAAGAAAGAGTCGGCACATTGTTGAGAAGATAA
>Glyma09g28890.1 sequence type=predicted peptide gene model=Glyma09g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLVFALILLGFLLGVAAVVAAEALGFLWVIKRLQSKISKDQAKIASKTQLGSAQSDRPQQQLLKKEGVVWVLEPDKVSKFWVEKQSSKELKRKKEVLEVTPVRKYGKINGQSLVLTDADGFHTTIQLKGCLVEAVSATSLPSKKWAKKFPIKVEAKTSVIYHGSKTFCIYLETACEKEAWCKALRLASSDNKEKHEWFAQLQEEFHSYLTSLNTEYLSLVKPSVGSSAETIEKASKPDGSSSKVRQFLKKLTKKSSRVGVENKSAWTSLSGREERKNTEKLRACQDAVLATGLMKSAAAANHLKSPLLDNSTPSSSTLPHSGSQSQFSVCSDADEKLGTDEGTLCWNLLVSRLFFDVKGNVRMKKSIQERIQRTLANMRTPSYVGEVICTDINMGNVPPCIIRMRVLPMEMSEVCALEFDIEYSGGALLEIETRLEVRELEHERGTEDSNPESSNVGAVPSDLLEGFEYLGEQLNLAEGMNDLLEPKGDDMSKSFKHSTSSSTQGSRWKSMLNSVAKQVSQVPLSLAIRIASLKGTLRLQIKPPPSDQLWFGFTFMPDIDFSLESFVGEHKITNSHIALFLVNRLKAAIRETLVLPNCESICIPWMLAEKDDWVPRSVAPFIWIHPESGNEISTSVDTNNQPCGGLKASARTLSGDGPELKQHKPPKCTKSSQEPARKSDSVALPPISSSSVTLRSSKSSEELTRPLLENDKPQETRDLQELRTTSLQNDNTNEASEEKMGDISVSESPPRNVVMDKQYSSIEQDDSRPRKIGKRERILDLKKRMSEKLEERVGTLLRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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