SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17590 | AT | Annotation by Michelle Graham. TAIR10: transcription regulatory protein SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=240 | SoyBase | E_val: 4.00E-19 | ISS |
| GO:0006338 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin remodeling | SoyBase | N/A | ISS |
| GO:0040029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic | SoyBase | N/A | ISS |
| GO:0000228 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF04855 | PFAM | SNF5 / SMARCB1 / INI1 | JGI | ISS | |
| UniRef100_D7RJ53 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SNF5 n=1 Tax=Glycine max RepID=D7RJ53_SOYBN | SoyBase | E_val: 9.00E-18 | ISS |
| UniRef100_UPI0002338A28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338A28 related cluster n=1 Tax=unknown RepID=UPI0002338A28 | SoyBase | E_val: 4.00E-33 | ISS |
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Glyma09g28814 not represented in the dataset |
Glyma09g28814 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28814.2 sequence type=transcript gene model=Glyma09g28814 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCACATGACATGATGCAAGAAATAAATGCAGCATATAATATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGGATCACCAGGAAGCCCTTCACTTGCATGATGAGGTCCAAATTACCCATGATATATTTTTTTGTAAATTGTACTGTATCTTTTTTCTCCGGTGCGAAACACTTCGTTAATAGACATATTGCAAGTGAGTGTACGTGTGAATAATGCAGCCTAATTGGCGTGGAGACCAAGATAATATGCCAGCATACAGCCAGGCCAAGTATCACAGAATCAAAATTTTGAACAGTCACAGTTTGCGGAGTTTCGATCCTATGAAGGCCAGGTTATGTATGTTGGGGAGAAGATTGTTCCGATCAAGCTTGATCTTTGTGTTAATCATACGCTCGTGAAGGACCAATTTTTATGGGACTTGGACAACTTTGAGAGTGATCATGAAGAGTTTGCCAAAATCTCTACAAGGACACGAGCATTGAATATCCCGAGGTTGGAGAAAGTATATAACTTACTATCACTAGTAATAAGTTAAGATAAAACTACGCATGTTGGAGCAGTGTTAAAACTTACCGCTCCCCAAGAAAGAATGATAACTGAAATCTTAACTTGTGCTAAGTGCCAACTTTATGTTGTTTTCCATGATCTTTCTTCTTATGAACATAATAGGTTTTTTTATAGAAAAGAAAAATTATGTTGGT
>Glyma09g28814.1 sequence type=CDS gene model=Glyma09g28814 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATGTTGGGGAGAAGATTGTTCCGATCAAGCTTGATCTTTGTGTTAATCATACGCTCGTGAAGGACCAATTTTTATGGGACTTGGACAACTTTGAGAGTGATCATGAAGAGTTTGCCAAAATCTCTACAAGGACACGAGCATTGAATATCCCGAGGTTGGAGAAAGTATATAACTTACTATCACTAGTAATAAGTTAA >Glyma09g28814.2 sequence type=CDS gene model=Glyma09g28814 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATGTTGGGGAGAAGATTGTTCCGATCAAGCTTGATCTTTGTGTTAATCATACGCTCGTGAAGGACCAATTTTTATGGGACTTGGACAACTTTGAGAGTGATCATGAAGAGTTTGCCAAAATCTCTACAAGGACACGAGCATTGAATATCCCGAGGTTGGAGAAAGTATATAACTTACTATCACTAGTAATAAGTTAA
>Glyma09g28814.1 sequence type=predicted peptide gene model=Glyma09g28814 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYVGEKIVPIKLDLCVNHTLVKDQFLWDLDNFESDHEEFAKISTRTRALNIPRLEKVYNLLSLVIS* >Glyma09g28814.2 sequence type=predicted peptide gene model=Glyma09g28814 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYVGEKIVPIKLDLCVNHTLVKDQFLWDLDNFESDHEEFAKISTRTRALNIPRLEKVYNLLSLVIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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