SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09670 | AT | Annotation by Michelle Graham. TAIR10: Oxidoreductase family protein | chr4:6107382-6109049 REVERSE LENGTH=362 | SoyBase | E_val: 7.00E-153 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2741 | KOG | Dimeric dihydrodiol dehydrogenase | JGI | ISS | |
| PTHR22604 | Panther | OXIDOREDUCTASES | JGI | ISS | |
| PTHR22604:SF16 | Panther | OXIDOREDUCTASE | JGI | ISS | |
| PF01408 | PFAM | Oxidoreductase family, NAD-binding Rossmann fold | JGI | ISS | |
| PF02894 | PFAM | Oxidoreductase family, C-terminal alpha/beta domain | JGI | ISS | |
| UniRef100_D7LXC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LXC3_ARALL | SoyBase | E_val: 1.00E-150 | ISS |
| UniRef100_I1L3Q7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3Q7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g28800 not represented in the dataset |
Glyma09g28800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g159400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28800.1 sequence type=CDS gene model=Glyma09g28800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGATGATCAAACGGCAGTGCGTTTTGGTATTCTTGGATGTGCTAACATCTCCATCAAGCTATGCAAAGCCCTAAGCAAAGCACCAAATGCCAAGCTCCATGCCATAGGCAGCCGTTCCCTCGAGAAGGCGACGGCGTTCGCGGCTGAGCACGGCCTTCCCGAGGCTGTTAGGGTTTACGGGAGCTATGAGGGTGTGTTGGAAGATGAGGAGGTGGACGCCGTGTACATCCCTCTTCCGACGGGTTTGCACGTGACATGGGCGGTGAGGGCCGCGGAGAGGCGGAAGCACGTGCTGCTGGAGAAGCCGGTGGCGATGAATGTGGCGGAGCTTGACCGGATTCTTGAGGCTTGCGAGGCTCATGGGGTGCAGTTCATGGATGGCACCATGTGGGTGCACCACCCTCGAACGGCTAAAATGAAGGAGGCTTTGTCTGATGCTCAACGTTTTGGTCAACTCAAATGGATACACTCGTGCCTCACGTACAACCCTGGTCCTGAATTTCTCAAAAACAGCATTCGTGTGAAGCCAGATTTAGATGGTCTTGGTGCCCTGGGTGACACTGGTTGGTATTGCATAAGAGCCATTTTATGGGCTGTGAACTATGAACTTCCAAAATCAGTGCTTGCATTCCCAGGAGCAATTCTCAATGAAGAAGGTGTAATAATCTCTTGTGGCTCTTCTATGCATTGGGAAGATGGAAGATCTGCCACGTTCCACTGTTCTTTCTTATCCTATGTAACTTTTGATGTAACGGTTTTGGGAACAAAAGGGTGTCTTCGTCTCAATGATTTTGCTCTTCCATTTGAGGAAAGTTTAGGGTTTGGGAAATTTTTGGAGGCCTCAGAGTTGGATTATGGGAAGATTGAACAGGGAATGTGGTGTCCAAAGCCAAATGAGCATGTTGTTGAGACTGGGTTTTCTCAAGATATTTTGATGGTTAAGGAGTTTGCTGATTTGGTTCGAAAGGTTCAGGGGTGTGAAATGAAGCCTGAGAAGACTTGGCCAGTTTTGAGTAGGAAGACTCAGGTAGTTTTGGATGCAGTGAAAGAATCCATTGAGAAAGGTTACCAGCCTGTTGAATTGTGA
>Glyma09g28800.1 sequence type=predicted peptide gene model=Glyma09g28800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDDQTAVRFGILGCANISIKLCKALSKAPNAKLHAIGSRSLEKATAFAAEHGLPEAVRVYGSYEGVLEDEEVDAVYIPLPTGLHVTWAVRAAERRKHVLLEKPVAMNVAELDRILEACEAHGVQFMDGTMWVHHPRTAKMKEALSDAQRFGQLKWIHSCLTYNPGPEFLKNSIRVKPDLDGLGALGDTGWYCIRAILWAVNYELPKSVLAFPGAILNEEGVIISCGSSMHWEDGRSATFHCSFLSYVTFDVTVLGTKGCLRLNDFALPFEESLGFGKFLEASELDYGKIEQGMWCPKPNEHVVETGFSQDILMVKEFADLVRKVQGCEMKPEKTWPVLSRKTQVVLDAVKESIEKGYQPVEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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