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Report for Sequence Feature Glyma09g28770

Feature Type:gene_model
Chromosome:Gm09
Start:35712132
stop:35712293
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g28770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47820AT Annotation by Michelle Graham. TAIR10: PLANT U-BOX 39 | chr3:17644434-17645963 FORWARD LENGTH=509 SoyBaseE_val: 5.00E-21ISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005871GO-cc Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0019894GO-mf Annotation by Michelle Graham. GO Molecular Function: kinesin binding SoyBaseN/AISS
UniRef100_I1JX38UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JX38_SOYBN SoyBaseE_val: 7.00E-25ISS
UniRef100_Q9STT1UniRef Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein 39 n=1 Tax=Arabidopsis thaliana RepID=PUB39_ARATH SoyBaseE_val: 2.00E-18ISS

Expression Patterns of Glyma09g28770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g28770 not represented in the dataset
Glyma09g28770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g28770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma09g28770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g28770
>Glyma09g28770.1   sequence type=CDS   gene model=Glyma09g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGACCCTGTCGTCGTAGCCTCGGGCCAAACCTTCGAACGCCTCGTCGTTCAACTCTGCAAAGACCTCAACTTCTCCCCGAAGCTGGACGATGGCACCCAACCCGACTTCTCCACCATAATCCTGAACCACGCCATCAAAACGACCATCCTCCACTAG
Predicted protein sequences of Glyma09g28770
>Glyma09g28770.1   sequence type=predicted peptide   gene model=Glyma09g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDPVVVASGQTFERLVVQLCKDLNFSPKLDDGTQPDFSTIILNHAIKTTILH*






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