SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10580 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF599 | chr5:3347511-3348657 FORWARD LENGTH=246 | SoyBase | E_val: 2.00E-84 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04654 | PFAM | Protein of unknown function, DUF599 | JGI | ISS | |
| UniRef100_I1L3Q5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L3Q5_SOYBN | SoyBase | E_val: 9.00E-161 | ISS |
| UniRef100_Q9LXB0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g10580/F12B17_70 n=1 Tax=Arabidopsis thaliana RepID=Q9LXB0_ARATH | SoyBase | E_val: 1.00E-81 | ISS |
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Glyma09g28760 not represented in the dataset |
Glyma09g28760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g159100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28760.1 sequence type=CDS gene model=Glyma09g28760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGGAGGACATGTTATCTGGATATGACACTGATACCTTTGGGGTTACTCATAAACATTGGCTACCATGTTTGGTTATGTTATAAGGTCAGGACACAGGCTTCCTTAACCATCTTCGGAATAGATGCCGATGGCCGGTGTTCGTGGGTTCCTGCCATGATCAAGGATATTGAAAAGAATAACATTGTAGCTATCCAAAATATTCGGAACATGATCATGGGATCAATCTTTATGGCCAGCACAAGCATCCTTCTCTGCTGTGGCCTTGGAGCAATGATAAGCAGCACCTACAGTGTGAAGAAGCCTCTCATTGACTCAATTTATGGAGCACACGGGGAATTTGTATTGGCACTAAAATATGCAACCCTCTTTACAATATTCTTATTCTCATTTCTCTTTCACTCTCTCTCAGTTAGGTTTCTCACCCAGTTAAGCATTCTCATTTGCACACCACAAGATGCCATCATGACCTTGGTTACCCCAAAGTATTTGACTGAGCTATTAAGAAAGGCCACTTTTTTGAATATTGTGGGAAACAGGATTTTACACACAGGACTTGCCCTTCTCCTTTGGATCTGTGGACCAGTGATGGCATTCTTGTGTTCAGTTGCCATGTTGTTGGTGCTTCATAAGCTGGACTTTGTGGCTAGAAAAGAAAAGATAAAGGTTGGAATTACCGAAGAAAGTGGCACACAGCCTGAGATTTGA
>Glyma09g28760.1 sequence type=predicted peptide gene model=Glyma09g28760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEWRTCYLDMTLIPLGLLINIGYHVWLCYKVRTQASLTIFGIDADGRCSWVPAMIKDIEKNNIVAIQNIRNMIMGSIFMASTSILLCCGLGAMISSTYSVKKPLIDSIYGAHGEFVLALKYATLFTIFLFSFLFHSLSVRFLTQLSILICTPQDAIMTLVTPKYLTELLRKATFLNIVGNRILHTGLALLLWICGPVMAFLCSVAMLLVLHKLDFVARKEKIKVGITEESGTQPEI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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