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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma09g28660

Feature Type:gene_model
Chromosome:Gm09
Start:35595430
stop:35604160
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08430AT Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain;Plus-3;GYF | chr5:2716974-2720095 FORWARD LENGTH=553 SoyBaseE_val: 9.00E-112ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006352GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR14445Panther GRB10 INTERACTING GYF PROTEIN JGI ISS
PTHR14445:SF23Panther SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN / PL JGI ISS
PF02201PFAM SWIB/MDM2 domain JGI ISS
PF02213PFAM GYF domain JGI ISS
PF03126PFAM Plus-3 domain JGI ISS
UniRef100_B9SS21UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SS21_RICCO SoyBaseE_val: 4.00E-116ISS
UniRef100_UPI0002338A25UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A25 related cluster n=1 Tax=unknown RepID=UPI0002338A25 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g28660 not represented in the dataset

Glyma09g28660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g33391 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g158300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g28660.1   sequence type=CDS   gene model=Glyma09g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGGAAGGATGGGTGATGAACCTCGTGCTGGTTCTTTCTGGACGGAGGAAATTAATGAGGCGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCAACTTCCCTTATTTGGTTTCTCGAATCCATCGGTAGAGATACGAGCACCAAGATAGCTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCACAAGACGAAAAAGAAGCGAATTGAGTGTGATGAGAGGCTTCATTCGCTGTTTGGGAGGAAGACCATTAGCCGGTTGAAAATCAATGACCTGCTAGAGTCACACTTTAAGGAGAACTGTGAGGAGTCCTCTGATGGCGTTTTCTTTGACTCAGAAGATGATGAGAATGCCTTGACAGCTTGTGAAACCCCGAGAACAGCACCTTCCGAGAGGAAGAGCCAACCAAAGAAACCAGTTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATATGAAGAGGAGTCTAGTTATGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTTGTTGGAAGCTTCATAAGAATCAGATGTGACCCTAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTACGAAGAAGAGTTCTGAAGTAAATGGGGAAATTCACCTTCAAGTTTCTGGTTTCATTAAAGATATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGAGGAGGAGTGTGAGAATTTGCACCAAAGAGTAAAAGATGGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGATTAAGCATTGGCTTGCAAGAGAATTTATTCTGCTACAAAATCTTATTGATCGAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGATGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGATGAGCAGGAACGGTTATTACGTGAATTTCCTCAAGTTATTGCAGATGAGCAAGAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACATATACAAAATCATCTTCAGTGACCGAGGTCCCAAATGAAGTTGCAAATTCAAAATTGGATATTGCTGATCTTGTAAAACAACAAAGCAATTCACCAAAGTCAATTCCCATTCTCCACAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCATAGAGCACCAGTCCCGTGGCTTATCTGTCCAACTGCCACCAGAGCAACATACAGTCTTTGCATATAAGAATTACATGTCTAAGCCCGGTGATTCACAAGCACTTCCCGACAAGCAGATGTGGTCGCCTCAGATTCAGGTTATAAGGCTAAGCAATGGCTTATCAGTCCGACAGTCGCCAGAGCAACAAACAGACATTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGAACATCTAAGCCAGCCGAATCACAGGAAGAAAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCAGCTCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGTTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGACCATCTAAGCCAGCCAAATCACAGGAAGAGAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCATCTCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCATCCGAATTGCATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATGCTGCAATCGCAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCCGCCAGAGCAACAAATAAGTTTTGCATATAATAATGGCACGTCTAAGCCAGCTGAATCGCATGAAGCGAAAATCTCTCAAGCACTGCCCAACAAACAAATACAGTCATCTCAGATTCAAGTTATAGAGCTAAGTGATGATGATGAAGATGAAGAAAATAAAAAACAAAGTACTACAAAACTGGTTCCTGCTGTGCAGTTGGATACCTTGATGTGGCATTACAGAGATCCAACGGGAAATGTACAAGGACCATTTTCCTTGATTTCTCTAAAACGTTGGAGTGATGCTGGCTACTTTCCTCGAGGTTTCAAGGTCTGGCAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCACAATTTGCCCAATTTTTCCCCTTTTAA

>Glyma09g28660.1   sequence type=predicted peptide   gene model=Glyma09g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIGRMGDEPRAGSFWTEEINEAVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTKIAQSEVANIVMEYVKQHNLFHKTKKKRIECDERLHSLFGRKTISRLKINDLLESHFKENCEESSDGVFFDSEDDENALTACETPRTAPSERKSQPKKPVFEKPRSCFAAIVPANIKLVYMKRSLVMDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGTKKSSEVNGEIHLQVSGFIKDIRIQMLSDDNFSEEECENLHQRVKDGLVKRPMIVDMEQTARVLHEDMIKHWLAREFILLQNLIDRANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQESESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNEVANSKLDIADLVKQQSNSPKSIPILHRAPEVPLLDMTNNSTMLNCISRDTIEHQSRGLSVQLPPEQHTVFAYKNYMSKPGDSQALPDKQMWSPQIQVIRLSNGLSVRQSPEQQTDIAYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGTSKPAESQEEKISQALPNKQIRPAQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGPSKPAKSQEEKISQALPNKQIRPSQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPSELHEVKISQALPNKQMLQSQLDVIELSDGLPVQQPPEQQISFAYNNGTSKPAESHEAKISQALPNKQIQSSQIQVIELSDDDEDEENKKQSTTKLVPAVQLDTLMWHYRDPTGNVQGPFSLISLKRWSDAGYFPRGFKVWQSGNRQDEDVLLVNILAQFAQFFPF*







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