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Report for Sequence Feature Glyma09g28660
Feature Type: gene_model
Chromosome: Gm09
Start: 35595430
stop: 35604160
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g28660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G08430 AT
Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain;Plus-3;GYF | chr5:2716974-2720095 FORWARD LENGTH=553
SoyBase E_val: 9.00E-112 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0006352 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0009616 GO-bp
Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing
SoyBase N/A ISS
GO:0010050 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative phase change
SoyBase N/A ISS
GO:0016570 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone modification
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
PTHR14445 Panther
GRB10 INTERACTING GYF PROTEIN
JGI ISS
PTHR14445:SF23 Panther
SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN / PL
JGI ISS
PF02201 PFAM
SWIB/MDM2 domain
JGI ISS
PF02213 PFAM
GYF domain
JGI ISS
PF03126 PFAM
Plus-3 domain
JGI ISS
UniRef100_B9SS21 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SS21_RICCO
SoyBase E_val: 4.00E-116 ISS
UniRef100_UPI0002338A25 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338A25 related cluster n=1 Tax=unknown RepID=UPI0002338A25
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g28660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g28660
Paralog Evidence Comments
Glyma16g33391 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g28660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g158300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g28660
Coding sequences of Glyma09g28660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g28660.1 sequence type=CDS gene model=Glyma09g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATAGGAAGGATGGGTGATGAACCTCGTGCTGGTTCTTTCTGGACGGAGGAAATTAATGAGGCGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCAACTTCCCTTATTTGGTTTCTCGAATCCATCGGTAGAGATACGAGCACCAAGATAGCTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCACAAGACGAAAAAGAAGCGAATTGAGTGTGATGAGAGGCTTCATTCGCTGTTTGGGAGGAAGACCATTAGCCGGTTGAAAATCAATGACCTGCTAGAGTCACACTTTAAGGAGAACTGTGAGGAGTCCTCTGATGGCGTTTTCTTTGACTCAGAAGATGATGAGAATGCCTTGACAGCTTGTGAAACCCCGAGAACAGCACCTTCCGAGAGGAAGAGCCAACCAAAGAAACCAGTTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATATGAAGAGGAGTCTAGTTATGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTTGTTGGAAGCTTCATAAGAATCAGATGTGACCCTAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTACGAAGAAGAGTTCTGAAGTAAATGGGGAAATTCACCTTCAAGTTTCTGGTTTCATTAAAGATATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGAGGAGGAGTGTGAGAATTTGCACCAAAGAGTAAAAGATGGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGATTAAGCATTGGCTTGCAAGAGAATTTATTCTGCTACAAAATCTTATTGATCGAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGATGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGATGAGCAGGAACGGTTATTACGTGAATTTCCTCAAGTTATTGCAGATGAGCAAGAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACATATACAAAATCATCTTCAGTGACCGAGGTCCCAAATGAAGTTGCAAATTCAAAATTGGATATTGCTGATCTTGTAAAACAACAAAGCAATTCACCAAAGTCAATTCCCATTCTCCACAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCATAGAGCACCAGTCCCGTGGCTTATCTGTCCAACTGCCACCAGAGCAACATACAGTCTTTGCATATAAGAATTACATGTCTAAGCCCGGTGATTCACAAGCACTTCCCGACAAGCAGATGTGGTCGCCTCAGATTCAGGTTATAAGGCTAAGCAATGGCTTATCAGTCCGACAGTCGCCAGAGCAACAAACAGACATTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGAACATCTAAGCCAGCCGAATCACAGGAAGAAAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCAGCTCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGTTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGACCATCTAAGCCAGCCAAATCACAGGAAGAGAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCATCTCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCATCCGAATTGCATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATGCTGCAATCGCAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCCGCCAGAGCAACAAATAAGTTTTGCATATAATAATGGCACGTCTAAGCCAGCTGAATCGCATGAAGCGAAAATCTCTCAAGCACTGCCCAACAAACAAATACAGTCATCTCAGATTCAAGTTATAGAGCTAAGTGATGATGATGAAGATGAAGAAAATAAAAAACAAAGTACTACAAAACTGGTTCCTGCTGTGCAGTTGGATACCTTGATGTGGCATTACAGAGATCCAACGGGAAATGTACAAGGACCATTTTCCTTGATTTCTCTAAAACGTTGGAGTGATGCTGGCTACTTTCCTCGAGGTTTCAAGGTCTGGCAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCACAATTTGCCCAATTTTTCCCCTTTTAA
Predicted protein sequences of Glyma09g28660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g28660.1 sequence type=predicted peptide gene model=Glyma09g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIGRMGDEPRAGSFWTEEINEAVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTKIAQSEVANIVMEYVKQHNLFHKTKKKRIECDERLHSLFGRKTISRLKINDLLESHFKENCEESSDGVFFDSEDDENALTACETPRTAPSERKSQPKKPVFEKPRSCFAAIVPANIKLVYMKRSLVMDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGTKKSSEVNGEIHLQVSGFIKDIRIQMLSDDNFSEEECENLHQRVKDGLVKRPMIVDMEQTARVLHEDMIKHWLAREFILLQNLIDRANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQESESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNEVANSKLDIADLVKQQSNSPKSIPILHRAPEVPLLDMTNNSTMLNCISRDTIEHQSRGLSVQLPPEQHTVFAYKNYMSKPGDSQALPDKQMWSPQIQVIRLSNGLSVRQSPEQQTDIAYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGTSKPAESQEEKISQALPNKQIRPAQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGPSKPAKSQEEKISQALPNKQIRPSQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPSELHEVKISQALPNKQMLQSQLDVIELSDGLPVQQPPEQQISFAYNNGTSKPAESHEAKISQALPNKQIQSSQIQVIELSDDDEDEENKKQSTTKLVPAVQLDTLMWHYRDPTGNVQGPFSLISLKRWSDAGYFPRGFKVWQSGNRQDEDVLLVNILAQFAQFFPF*