Glyma09g28640 - SoyBase

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Report for Sequence Feature Glyma09g28640

Feature Type:	gene_model
Chromosome:	Gm09
Start:	35573357
stop:	35579018
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g28640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55620	AT	Annotation by Michelle Graham. TAIR10: Translation initiation factor IF6 \| chr3:20634581-20636312 FORWARD LENGTH=245	SoyBase	E_val: 1.00E-171	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042256	GO-bp	Annotation by Michelle Graham. GO Biological Process: mature ribosome assembly	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0043022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribosome binding	SoyBase	N/A	ISS
KOG3185	KOG	Translation initiation factor 6 (eIF-6)	JGI		ISS
PTHR10784	Panther	TRANSLATION INITIATION FACTOR 6	JGI		ISS
PF01912	PFAM	eIF-6 family	JGI		ISS
UniRef100_I1L3P5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Eukaryotic translation initiation factor 6 2 n=1 Tax=Glycine max RepID=I1L3P5_SOYBN	SoyBase	E_val: 6.00E-179	ISS
UniRef100_I1L3P5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 6 2 n=1 Tax=Glycine max RepID=I1L3P5_SOYBN	SoyBase	E_val: 6.00E-179	ISS

Expression Patterns of Glyma09g28640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g28640 not represented in the dataset	Glyma09g28640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g28640

Paralog	Evidence	Comments
Glyma16g33370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g28640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g158100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g28640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g28640

Limit To All Plant Sequences

>Glyma09g28640.2   sequence type=transcript   gene model=Glyma09g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAACCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGTCATTGGAAGTTCTGAAAACTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCTATTAGTGGTATTCGTGTTATTGGTCATCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACAATTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGATGAAAGATTATCTGCTCTGGGAAATTGTATCGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGTAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAACAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCGGCTGGAATGACAGTTAATGATTGGACCGCATTTTGTGGTTCCGACACCACCGCAACGGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCACAGCCTAGTGCAATTGTGGATGAGATGAGGAAATCCCTCATTGATACCTATGTCTGAACTGTGGTAGTAATAGTGTTTTGTTTTGTGCAATATATTGCACTGCTGATTGTTAAGATTTTCTAATTTAAGTTTTGGTGATAGTTTGTCTTTTGTAATGTGGGCATATATATTCCCATCGTGTTGTACTCTTTTTTCGTTAATTGTGATATCATATAATATCATGTGCTGATTTGTGTGACCAACACAAACAAATCAAATTTATGTAGGGGTTTTCTTGCGTTCCACTCGTGGTGACGACCTCAAAATAGCCTTAGGTTGATTCCGAAGCAATCAAATTCTGTCATGTTAGAACAAGT

Coding sequences of Glyma09g28640

Limit To All Plant Sequences

>Glyma09g28640.1   sequence type=CDS   gene model=Glyma09g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTCACCAATGCTTACTGTTTGGTTGCGATTGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACATCCATTGGTGGTACTCGTATCATTGGTCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACAATTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGATGAAAGATTATCTGCTCTGGGAAATTGTATCGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGTAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAACAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCGGCTGGAATGACAGTTAATGATTGGACCGCATTTTGTGGTTCCGACACCACCGCAACGGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCACAGCCTAGTGCAATTGTGGATGAGATGAGGAAATCCCTCATTGATACCTATGTCTGA

>Glyma09g28640.2   sequence type=CDS   gene model=Glyma09g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAACCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGTCATTGGAAGTTCTGAAAACTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCTATTAGTGGTATTCGTGTTATTGGTCATCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACAATTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGATGAAAGATTATCTGCTCTGGGAAATTGTATCGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGTAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAACAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCGGCTGGAATGACAGTTAATGATTGGACCGCATTTTGTGGTTCCGACACCACCGCAACGGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCACAGCCTAGTGCAATTGTGGATGAGATGAGGAAATCCCTCATTGATACCTATGTCTGA

Predicted protein sequences of Glyma09g28640

Limit To All Plant Sequences

>Glyma09g28640.1   sequence type=predicted peptide   gene model=Glyma09g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV*

>Glyma09g28640.2   sequence type=predicted peptide   gene model=Glyma09g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRLQFENNCEVGTFSKLTNAYCLVVIGSSENFYSVFEAELAGVIPVVKTSISGIRVIGHLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV*

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