SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15093 | AT | Annotation by Michelle Graham. TAIR10: catalytic LigB subunit of aromatic ring-opening dioxygenase family | chr4:8618454-8619472 FORWARD LENGTH=269 | SoyBase | E_val: 1.00E-119 | ISS |
| GO:0006725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular aromatic compound metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferrous iron binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016701 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | SoyBase | N/A | ISS |
| PF02900 | PFAM | Catalytic LigB subunit of aromatic ring-opening dioxygenase | JGI | ISS | |
| UniRef100_G7L6E5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 4,5-DOPA dioxygenase extradiol-like protein n=1 Tax=Medicago truncatula RepID=G7L6E5_MEDTR | SoyBase | E_val: 1.00E-158 | ISS |
| UniRef100_I1L3N6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3N6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g28490 not represented in the dataset |
Glyma09g28490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g156900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28490.1 sequence type=CDS gene model=Glyma09g28490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATAAGATCTTCAGATTTTGTTACAGTTTTTCAAATTATTCTGTGGCAAGGAGAGAAGAAAAGATCATAGAAAGTGGTGATTCTTCGAATATTGAAGAGAGAAATATGGGGTTGAGATTGAAGGAGACATTCTACTTGTCCCATGGAGCACCAACTCTTGCCGTAGATGATTCAATCCCTGCGTGGAACTTCTTCAATTCGTGGAAGGAGCAGTTTCCGACGAGACCCTCTTCCATTCTTATTATCTCCGCCCACTGGGACACCCATGTTCCCACCGTCAACGTCGTTCACCAGAATGATACCATCTACGACTTCTATGGCTTCCCCAAATCCATGTACAAGCTGAAGTATCCAGCACCAGGGGCTCCACACTTAGCAAAGAGGGTGAAGGAGCTACTCTTAGGATCAGGGTTTAGCCATGTGGATGAAGATAAGAAACGTGGGCTTGACCATGGTGCATGGGTGCCACTCTTGTTGATGTACCCAGAGGCAGACATCCCAGTGTGTCAACTCTCTATTTCATCAAACAAAGGTGGTACCTATCACTACAACATGGGAAAGGCTTTGGCTCCTCTTAAGGATGAGGGTGTTCTTATCGTTGGGTCTGGGAGTGCCACCCACAACCTCAGAGCAATTGCACCTCGTGGTACCCCACCTGCTCCATGGGCTTCCGCATTTATGTCCTGGCTAAAAACCTCTCTTCTTGATGGAAGATACGAGGAAGTAAATGAATACGAAGAGAAGGCCCCATATGCAAAAATGGCTCATCCCTGGCCAGATCACTTCTTCCCATTGCATGTGGCCATGGGAGCTGCTGGTGAAAATTCAAAGGCCAAAGTTGTACATGATAGTTGGGATGGTGGTTCTATGTCTTATGCTTCTTTCGGTTTTACAACAGCTGACAGTTGA
>Glyma09g28490.1 sequence type=predicted peptide gene model=Glyma09g28490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKIFRFCYSFSNYSVARREEKIIESGDSSNIEERNMGLRLKETFYLSHGAPTLAVDDSIPAWNFFNSWKEQFPTRPSSILIISAHWDTHVPTVNVVHQNDTIYDFYGFPKSMYKLKYPAPGAPHLAKRVKELLLGSGFSHVDEDKKRGLDHGAWVPLLLMYPEADIPVCQLSISSNKGGTYHYNMGKALAPLKDEGVLIVGSGSATHNLRAIAPRGTPPAPWASAFMSWLKTSLLDGRYEEVNEYEEKAPYAKMAHPWPDHFFPLHVAMGAAGENSKAKVVHDSWDGGSMSYASFGFTTADS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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