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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23550 | AT | Annotation by Michelle Graham. TAIR10: Got1/Sft2-like vescicle transport protein family | chr5:7939914-7941479 REVERSE LENGTH=175 | SoyBase | E_val: 7.00E-99 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2887 | KOG | Membrane protein involved in ER to Golgi transport | JGI | ISS | |
| PTHR23137 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04178 | PFAM | Got1/Sft2-like family | JGI | ISS | |
| UniRef100_I1L3N4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L3N4_SOYBN | SoyBase | E_val: 1.00E-126 | ISS |
| UniRef100_Q9LT07 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Got1/Sft2-like vescicle transport protein n=1 Tax=Arabidopsis thaliana RepID=Q9LT07_ARATH | SoyBase | E_val: 3.00E-96 | ISS |
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Glyma09g28470 not represented in the dataset |
Glyma09g28470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g156800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28470.3 sequence type=transcript gene model=Glyma09g28470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAACTAATATGCTCTCTGTCTGTGATCAGAGACTATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGTCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTTGGTAATTTGCTTTCACTTGGAAGCACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTCTGTGCTCTTTATGTTCATAACAAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGACATTGTATGTTGAACTCACTGCATTGACAGCCTCAATATCCTTGCAGTCCTGTAGAAAAGTTTTTTTGCTGCTGAAATACACTTGTGGACTATGATTCTCTACTGCTTGCTCTTTCCTTTTGTGGAGTCTTGTTTAGGTTTTACTAGATTGTTAGACGTAAAATCTTGTTAATTTGTATTATGTTGTTTATGAGCTAATGTAAAGATTTTCATTTCTTTCAACTAGTTGTCATCTCATTCTTGGTGGAGGCTAAGATGGGAGAGTTAAACATGTTTCTCACCATGGGAAAGACCACCAGTGTGCCATCGTTGGAATTTTTTTCTCCTTTCCTCTTGCACCGCGTGCTTCATTGGCACCCACTAAAACTAACACAAAAAATGAATCTTCATCTTGGTGGCGCCTGAAGATGCTTTACCAAAGCAAAAGTCGTGCATCCTTCAACAATCATGTTCATCACTTCCTCTACAAACACAATCACTAAACGATTTACACACGTTTATGCAACCAATAAAGAGAAACATGGAAGAAGAAACACCATACTGCAATCCAAACAAACACAGCGACACACACACGATGAGATTAGAGGCATTGATTTACCATTGGCGCCAATGAGTTTTTTCAAAAACTAAAATAAATTAATTTGCTTTGCTCGTCCATACTCACATTTTTGCGAGATCGACAATTGTATGAGTGGCGTGGAAAGGAGTTTTGCATGCTCATCGACATGGCCAATGTCGTTCTGATCTTCCCCTCTTAGAGAGTTGTTTCTTGTCGTGCTTACAGTTTTGGCCCGT
>Glyma09g28470.1 sequence type=CDS gene model=Glyma09g28470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAGATGAACAAAGCCTTCGAGAAAGTGAAGATTATGGTGGGAATGGATGTCGAAGACGAAGAGCAACAAGCTGCGGCATTGGACAACAGCAACTCCTTCGCCTTCATGGACGACTTCAACCGCAACTGCACCTTGTCCACCACACAGAGACTATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGTCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTTGGTAATTTGCTTTCACTTGGAAGCACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTCTGTGCTCTTTATGTTCATAACAAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAG >Glyma09g28470.3 sequence type=CDS gene model=Glyma09g28470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCTCTGTCTGTGATCAGAGACTATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGTCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTTGGTAATTTGCTTTCACTTGGAAGCACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTCTGTGCTCTTTATGTTCATAACAAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAG
>Glyma09g28470.1 sequence type=predicted peptide gene model=Glyma09g28470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKMNKAFEKVKIMVGMDVEDEEQQAAALDNSNSFAFMDDFNRNCTLSTTQRLYGFAICFASGLTCTLLSMLVFFKPIKFAIAFTLGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARAMVSKIMVSCFDTEF* >Glyma09g28470.3 sequence type=predicted peptide gene model=Glyma09g28470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSVCDQRLYGFAICFASGLTCTLLSMLVFFKPIKFAIAFTLGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARAMVSKIMVSCFDTEF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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