Glyma09g28401 - SoyBase

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Report for Sequence Feature Glyma09g28401

Feature Type:	gene_model
Chromosome:	Gm09
Start:	35373481
stop:	35377634
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g28401

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33330	AT	Annotation by Michelle Graham. TAIR10: Class I peptide chain release factor \| chr1:12084968-12086238 FORWARD LENGTH=257	SoyBase	E_val: 3.00E-69	ISS
GO:0006415	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational termination	SoyBase	N/A	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation release factor activity	SoyBase	N/A	ISS
PTHR11075	Panther	PEPTIDE CHAIN RELEASE FACTOR	JGI		ISS
PTHR11075:SF18	Panther	PEPTIDE CHAIN RELEASE FACTOR, PUTATIVE	JGI		ISS
PF00472	PFAM	RF-1 domain	JGI		ISS
UniRef100_B9S081	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide chain release factor, putative n=1 Tax=Ricinus communis RepID=B9S081_RICCO	SoyBase	E_val: 2.00E-69	ISS
UniRef100_I1L3M7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L3M7_SOYBN	SoyBase	E_val: 1.00E-103	ISS

Expression Patterns of Glyma09g28401

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g28401 not represented in the dataset	Glyma09g28401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g28401

Paralog	Evidence	Comments
Glyma16g33200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g28401 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma09g28401

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g28401

Limit To All Plant Sequences

>Glyma09g28401.2   sequence type=transcript   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAGGTGTGGCTGAATATGCAGCAAACCATTGTTGAGCTTACAAGAACAGAGCATGCTCTGTTTGGAGTTCGAACTCTGAAGTGTAGTGTCGTGTCACTGAGCCCCCGAGAAGGAGAGAGAGTCTAGCAATGGCATACAAAACCCTCTTCAAACCAAGTCTCATCCTCACACTCCGACTCAACAAAACGGTCATTTCACTCTCACACCACCATCCATTTCGCCACTCGCAACCACCCTTTCCTTCCTCAGCACTCATCCAATTCCAATCTCACTTCCTCCAACAACGAGAATTACTAACTACACCCACTTATGGTGCTCTAATTACACCACCCTCAGCGAAACCATTGAGGGTTCAGAAAAATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGAGCGAGGTGGTCAGCACCGTAACAAGCGTGAATCCGCAGTGCGCCTCAAACACCTACCCTCTGGAATCATTGCTCAGGCTTCAGAAGACCGCTCCCAGCACAAGAACCGAGCTTCCGCGATTAATCTCCTTCGCTCTCTTATTGCTCTCAAAGTCAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCGGATACTTCCTCCTAAATCATCCATTAGAGGGCCAGATTATGGTCCACAAATTGGACCGAATAACCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGCGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCAGTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAATGATCTGCGGGCAACGAAGGGTATGAAGCCTCTCGAGTAGAAGTTCTCAAGTAGAACTACTCCATAGTTATGGAGTAAAGAAGGAAAGAGAAAACCTTCAATATGCATAGAAACTAGTCAAATAATGGAAAATTATGTTTCTACTAAGTGTTCTTTTAAATGAAAAAAATTCTTTGAACCTGTATGAAGCATTTTCTTCGTTAAAGAATTGAGATTGACAATGAAAAATACTGAAGCTAGTGAGGAGAAAGGGGGAAGGTTGCTGAATTTTCAGATTGTAGAGAACAAATTCTACAGAACTCAATGAGTATGTTGAATAAAGCTGGTGCCTTAAGGAGCATTGAGATCACAGCCTTTAGATGCATTTTTTCTGTAGATCTTTTTAAACAAAATTAATTTCTTGATTTTCTGGCTCTGTATACAGTTTTTTTTTTGTTTCTTTTTTTCTAGTTTATACTAAACATCAAATTAAGTTTGACAACGTGGGATACAGGATGCAGATATTTGTTGCTTTTATTTTAAAAGAAACTATATTTATCAATATCTTGATTTT

>Glyma09g28401.3   sequence type=transcript   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAGGTGTGGCTGAATATGCAGCAAACCATTGTTGAGCTTACAAGAACAGAGCATGCTCTGTTTGGAGTTCGAACTCTGAAGTGTAGTGTCGTGTCACTGAGCCCCCGAGAAGGAGAGAGAGTCTAGCAATGGCATACAAAACCCTCTTCAAACCAAGTCTCATCCTCACACTCCGACTCAACAAAACGGTCATTTCACTCTCACACCACCATCCATTTCGCCACTCGCAACCACCCTTTCCTTCCTCAGCACTCATCCAATTCCAATCTCACTTCCTCCAACAACGAGAATTACTAACTACACCCACTTATGGTGCTCTAATTACACCACCCTCAGCGAAACCATTGAGGGTTCAGAAAAATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGAGCGAGGTGGTCAGCACCGTAACAAGCGTGAATCCGCAGTGCGCCTCAAACACCTACCCTCTGGAATCATTGCTCAGGCTTCAGAAGACCGCTCCCAGCACAAGAACCGAGCTTCCGCGATTAATCTCCTTCGCTCTCTTATTGCTCTCAAAGTCAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCGGATACTTCCTCCTAAATCATCCATTAGAGGGCCAGATTATGGTCCACAAATTGGACCGAATAACCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGCGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCAGTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAATGATCTGCGGGCAACGAAGAAAAAAATTCTTTGAACCTGTATGAAGCATTTTCTTCGTTAAAGAATTGAGATTGACAATGAAAAATACTGAAGCTAGTGAGGAGAAAGGGGGAAGGTTGCTGAATTTTCAGATTGTAGAGAACAAATTCTACAGAACTCAATGAGTATGTTGAATAAAGCTGGTGCCTTAAGGAGCATTGAGATCACAGCCTTTAGATGCATTTTTTCTGTAGATCTTTTTAAACAAAATTAATTTCTTGATTTTCTGGCTCTGTATACAGTTTTTTTTTTGTTTCTTTTTTTCTAGTTTATACTAAACATCAAATTAAGTTTGACAACGTGGGATACAGGATGCAGATATTTGTTGCTTTTATTTTAAAAGAAACTATATTTATCAATATCTTGATTTT

Coding sequences of Glyma09g28401

Limit To All Plant Sequences

>Glyma09g28401.1   sequence type=CDS   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGAGCGAGGTGGTCAGCACCGTAACAAGCGTGAATCCGCAGTGCGCCTCAAACACCTACCCTCTGGAATCATTGCTCAGGCTTCAGAAGACCGCTCCCAGCACAAGAACCGAGCTTCCGCGATTAATCTCCTTCGCTCTCTTATTGCTCTCAAAGTCAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCGGATACTTCCTCCTAAATCATCCATTAGAGGGCCAGATTATGGTCCACAAATTGGACCGAATAACCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGCGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCAGTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAATGATCTGCGGGCAACGAAGGGTATGAAGCCTCTCGAGTAG

>Glyma09g28401.2   sequence type=CDS   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGAGCGAGGTGGTCAGCACCGTAACAAGCGTGAATCCGCAGTGCGCCTCAAACACCTACCCTCTGGAATCATTGCTCAGGCTTCAGAAGACCGCTCCCAGCACAAGAACCGAGCTTCCGCGATTAATCTCCTTCGCTCTCTTATTGCTCTCAAAGTCAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCGGATACTTCCTCCTAAATCATCCATTAGAGGGCCAGATTATGGTCCACAAATTGGACCGAATAACCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGCGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCAGTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAATGATCTGCGGGCAACGAAGGGTATGAAGCCTCTCGAGTAG

>Glyma09g28401.3   sequence type=CDS   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGAGCGAGGTGGTCAGCACCGTAACAAGCGTGAATCCGCAGTGCGCCTCAAACACCTACCCTCTGGAATCATTGCTCAGGCTTCAGAAGACCGCTCCCAGCACAAGAACCGAGCTTCCGCGATTAATCTCCTTCGCTCTCTTATTGCTCTCAAAGTCAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCGGATACTTCCTCCTAAATCATCCATTAGAGGGCCAGATTATGGTCCACAAATTGGACCGAATAACCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGCGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCAGTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAATGATCTGCGGGCAACGAAGAAAAAAATTCTTTGA

Predicted protein sequences of Glyma09g28401

Limit To All Plant Sequences

>Glyma09g28401.1   sequence type=predicted peptide   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPEPLGRGAHAAERGGQHRNKRESAVRLKHLPSGIIAQASEDRSQHKNRASAINLLRSLIALKVRKTVDLEAYSPPRELLRILPPKSSIRGPDYGPQIGPNNPKFASGMQALLDLIFAVAGSVSEAAKYLGLSTGAVSRLILSDDSLRKEVNDLRATKGMKPLE*

>Glyma09g28401.2   sequence type=predicted peptide   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPEPLGRGAHAAERGGQHRNKRESAVRLKHLPSGIIAQASEDRSQHKNRASAINLLRSLIALKVRKTVDLEAYSPPRELLRILPPKSSIRGPDYGPQIGPNNPKFASGMQALLDLIFAVAGSVSEAAKYLGLSTGAVSRLILSDDSLRKEVNDLRATKGMKPLE*

>Glyma09g28401.3   sequence type=predicted peptide   gene model=Glyma09g28401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPEPLGRGAHAAERGGQHRNKRESAVRLKHLPSGIIAQASEDRSQHKNRASAINLLRSLIALKVRKTVDLEAYSPPRELLRILPPKSSIRGPDYGPQIGPNNPKFASGMQALLDLIFAVAGSVSEAAKYLGLSTGAVSRLILSDDSLRKEVNDLRATKKKIL*

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