SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53150 | AT | Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726 | SoyBase | E_val: 4.00E-167 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| PTHR25040 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR25040:SF41 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| PF11926 | PFAM | Domain of unknown function (DUF3444) | JGI | ISS | |
| UniRef100_G7KMW0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7KMW0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338A19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338A19 related cluster n=1 Tax=unknown RepID=UPI0002338A19 | SoyBase | E_val: 0 | ISS |
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Glyma09g28290 not represented in the dataset |
Glyma09g28290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g155400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28290.2 sequence type=CDS gene model=Glyma09g28290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGCAATAAGGATGAGGCTACCCGAGCTAAAGAAATTGCTGAGAGGAAGTTTGCTGCAAAGGATACATTGGGTGCAAAGAAATTTGCTTTGAAGGCCTTAAATTTATTTCCGGATCTTGAGGGTATTTCTCAAATGGTAGCAACACTTGATGTGTATATTGCTGCCGAGAATAAAACAAATGGAGAAGCAGATTGGTATGGTGTGCTTGGTGTGGACCCCCTTGCTGACGAAGATACTGTCAGGAGACAATACAGGAAGCTAGCTCTCCAGCTTCACCCTGATAAGAACAAGTCCATTGGAGCTGATGGGGCCTTTAAACTCATTTCAGAGGCATGGAGTTTACTATCAGATAAGGCTAAAAGGGCATCGTATGATAAGAGAAGTGGAAGAGACCGGAAAGTTTCTACTAAGTTTGGAGGTCCATCATCACAAAAAGGGACTAATGGTAGTTTCAATTTCACTAAGACCGCCCCTTCATGTGCAACTACTCGGAAGAATACTGCAAAAGAGCATGCTTCATCTTCTACTCATAAGTCAAAATCAAATACATTTTGGACTGTTTGCCGTCGATGCAAAATGCAGTATGAGTATCTTAGAGTTTATCTTAACCTTAAACTCTTATGTCCCAACTGCCATGAGGCATTTGTGGCTGTAGAAACTGCTCCTCCACCTGCAAGTGGTATTAGACCTGCAACTCAATGGAGTTTTTCACAGAAGCAAAATTCCAGCCGCCAACCTAATAAAAGCAAATCTAATGCTGGAAAGAATAACATGGCAGCCCCAAATGTTGGAGGAGGGTCTTGTAGTAAGACTGACTCCTATGAAAAGGCCAATTTCCAGTGGGCTCCATTCTCAAAAATATCTGGTGTTTCTAATGTTGCTCAAGCTGCAAGTGTGGTTCAGCAGGCATATGATAAGGTGAAGCGAGATCGTGAAGAGGCACAAGCAGCTAGGAAAAGGGAAGAGGCCTTAAAAAGGAAGCAGCATGCTTCTAAAAAGGGTTACTATAATCCTTCTAAGAGAAGAAGGGGGGGCATGGAGGATGCTAGTGCGAGTAACCATGGTAAGGAAACAAACTCATTCAGATCTAAACAGGGCAATTTTGAATATAATAGGGTTAATGGAATCAGCAAGACCGGCCATGTGGGAGATATCTCCCCAGTTCAACTGAAGAATCTTCTTATGGAAAAAGCTAGAAAAGAAATTAGCAATAAACTCAGGCAAGTTCAGTCAAATGCTGTTGATAAAACTGCGATGAAAGAGAATGGAAATGACTTCCAAGAAGTGAGTGAGAAAGGAGAAAAATGTTCCAGAAACTCTGAGATGTGTGCTCAGGATAACATTGAGAAGTCAGAAGATAGAAAAAGCGGATCCCGAGCCATCAAGCCATTTGCAGGTTCTACAATTGCTAAAGTTAGCCGAAAATTTTTGGAAACAACACCTGTAGATGTACTATATCCTGATTTCCATGATTTTTGCAAAGATCGAACTGAAGGATCTTTTGGTGAAAATCAAGTATGGGCCGTGTATGATAACGATGATGGGATGCCTCGATGTTATGTGCTGATTCGCCGCATCATCTCCCTGAATCCGTTCAAGATGCAGATCAGTTGGCTCAACCCAAATACCAACAGTGAACTGGGCCCCCTAAAATGGGTTGCTTCAGGCTTTTCAAAAATTTGTGGGGATTTCAGAACAAGCAGACCTGAAATTTGTGGTTCTACCAATTTTTTCTCCCATAAGGTTAGGTGGAGAACTGGTGCTGAGGGAGCCATTTGTATATATCCGAGGAAAGGTGATGTTTGGGCCATATACAGGAACTGGTCTCCTGACTGGAATGAGCTAACAGCAGATGAGGTTATACACAAGTTTGATGTGGTTGAAGTACTTGAGGATTTTATTGAAGGGCATGGTATAGATGTTATTCCTCTGGTCAAAGTGGCTGGATTCAGGACAGTGTTTCACCACCACTTAGATCCAAAAGAAATCAGGATCATTCCGAGGGAAGAGATGTTTCGATTCTCTCATCAAATACCTTCATATGTACTCACTGGTCAAGAAGCTCCAGAGGCTCCAAAGGGTTGCAGGGTGCTGGACCCAGCTGCTACTCCATTTGAACTTCTTCAGGTAATAGAAGTTGTGAAGAAGGAAAACGTGGCAGACGATGAGGATAGTGATGTAAAAAAAACAAGTGATAACATGAAAAAAGATAATGATGAGGAAATGATCGATGCTATGGGAAAACATGGGGAAGAAAAGGAGGCAAAAGACGAAGACATGCAGGAAGTAGAACCAAGTGATAACATGAAAAAAGGCAATGAGGAAATGACCAATGATACCGGAAGACTTAGGGAAGAAAAGGAGGGAAAGGACAAAGACATGCAGGAGGTAGAAACTTTGAAAGAGGACAAAGAGAGAGAAGATTTGCAGTAG
>Glyma09g28290.2 sequence type=predicted peptide gene model=Glyma09g28290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MECNKDEATRAKEIAERKFAAKDTLGAKKFALKALNLFPDLEGISQMVATLDVYIAAENKTNGEADWYGVLGVDPLADEDTVRRQYRKLALQLHPDKNKSIGADGAFKLISEAWSLLSDKAKRASYDKRSGRDRKVSTKFGGPSSQKGTNGSFNFTKTAPSCATTRKNTAKEHASSSTHKSKSNTFWTVCRRCKMQYEYLRVYLNLKLLCPNCHEAFVAVETAPPPASGIRPATQWSFSQKQNSSRQPNKSKSNAGKNNMAAPNVGGGSCSKTDSYEKANFQWAPFSKISGVSNVAQAASVVQQAYDKVKRDREEAQAARKREEALKRKQHASKKGYYNPSKRRRGGMEDASASNHGKETNSFRSKQGNFEYNRVNGISKTGHVGDISPVQLKNLLMEKARKEISNKLRQVQSNAVDKTAMKENGNDFQEVSEKGEKCSRNSEMCAQDNIEKSEDRKSGSRAIKPFAGSTIAKVSRKFLETTPVDVLYPDFHDFCKDRTEGSFGENQVWAVYDNDDGMPRCYVLIRRIISLNPFKMQISWLNPNTNSELGPLKWVASGFSKICGDFRTSRPEICGSTNFFSHKVRWRTGAEGAICIYPRKGDVWAIYRNWSPDWNELTADEVIHKFDVVEVLEDFIEGHGIDVIPLVKVAGFRTVFHHHLDPKEIRIIPREEMFRFSHQIPSYVLTGQEAPEAPKGCRVLDPAATPFELLQVIEVVKKENVADDEDSDVKKTSDNMKKDNDEEMIDAMGKHGEEKEAKDEDMQEVEPSDNMKKGNEEMTNDTGRLREEKEGKDKDMQEVETLKEDKEREDLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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