SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33360 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent Clp protease | chr1:12092111-12095789 FORWARD LENGTH=656 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0745 | KOG | Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) | JGI | ISS | |
| PTHR11262 | Panther | HSL AND CLP PROTEASE | JGI | ISS | |
| PF07724 | PFAM | AAA domain (Cdc48 subfamily) | JGI | ISS | |
| PF10431 | PFAM | C-terminal, D2-small domain, of ClpB protein | JGI | ISS | |
| UniRef100_G7KMW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease ATP-binding subunit clpX n=2 Tax=Medicago truncatula RepID=G7KMW4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338A18 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338A18 related cluster n=1 Tax=unknown RepID=UPI0002338A18 | SoyBase | E_val: 0 | ISS |
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Glyma09g28260 not represented in the dataset |
Glyma09g28260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g33080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g155200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28260.1 sequence type=CDS gene model=Glyma09g28260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCGAGTCTTCGGTAGATGGAAGAATGCGAAGGAAATGGCGTTGCTTTCGGGGTCCCTGCCACGTGGGCACCATCGAACCGGGTTCAATTTTTGCCCAATTTCGACCCACCTGAACATGATCGCCGGCCACCGGTGGCGGGAGGCTCCGGTGGGGGTTCAGGAGCGGTACAAGTGGGACCGCGGCGGGTCGGACGATACCTCGTCCCGGAAGATCCGGGCCGAGGCGAATTGCCCACGTTGCACCAAAGACATGAACCTTGTTTTCTCCAATCGCCACTTTCCCACCCCACAAATTGAATCTGAATTGGGTGGTGGAGAAAGAGAAAAGGGTTACCAATCGGTGAACCTTTGCCCAAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTACTAACAATAATGGTGTTAATAATGTAAGCGGTAAGGGGCCTTCTCCTAGGAGGATCACACATGGGAAGGGTGGTGGCAAAGAGGGTAGTAGTAGTAGTACTAATAAGGGGGAGGAATTTGGGGGCAAGAGTAATAGTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGGCTTACAATGGTGGTGCTGGTGGAGGTGATGGTAGTAATGGCGAGCCACCTGAGTCGTGGCCGCTGCCACCAGATGATGGTAGTAATGGGAATGGGAATGGGAATGGATTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCACGGAATGGCGGATCGGGTGGTGCAGGTGGGGGCAAGGGCGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTTCCCTCGCCCAAGGAAATCTGTAAGGGTCTCGACAAGTTTGTTATTGGCCAACAGAGAGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGCCGCAGATTCAGGAGCTTCAGAAGTATTAGATGATGACGATAATGTGGAACTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTAGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTGTATAAACTACTTGTGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCCGAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGAATCCACGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCAAATATGAGAGCTGTTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAGTGGAAAGCGCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATTTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTACGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAACAATGTTAAGTTACACTTCACAGAGAATGCTCTAAGGCTGATAGCAAAAAAAGCGATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACCGAAGCCATGTTTGAGATTCCTGATATTAAGACAGGAAGTGACCGAGTTGATGCAGTTGTAATCGATGAAGAGTCAGTAGGATCACTAACTGCCCCTGGATGTGGAGGGAAAATTCTTCATGGAGATGGTGCTTTAAAGCAGTACCTCGCTAAGATGAAGGATTCAGCGGTGAATGTAGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATTAGCTTGTGA
>Glyma09g28260.1 sequence type=predicted peptide gene model=Glyma09g28260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRVFGRWKNAKEMALLSGSLPRGHHRTGFNFCPISTHLNMIAGHRWREAPVGVQERYKWDRGGSDDTSSRKIRAEANCPRCTKDMNLVFSNRHFPTPQIESELGGGEREKGYQSVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVTSTNNNGVNNVSGKGPSPRRITHGKGGGKEGSSSSTNKGEEFGGKSNSNASKWLEVSLWETLMAYNGGAGGGDGSNGEPPESWPLPPDDGSNGNGNGNGLAVHTPPGPPFAPGINVIRATGPRNGGSGGAGGGKGEKTAWGGSNLGKDFPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGASEVLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAVGITDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLTMVLTEPKNALGKQYKKLFSMNNVKLHFTENALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKTGSDRVDAVVIDEESVGSLTAPGCGGKILHGDGALKQYLAKMKDSAVNVDVGESDLQEGDLELSSRAISL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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