SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51600 | AT | Annotation by Michelle Graham. TAIR10: Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707 | SoyBase | E_val: 0 | ISS |
| GO:0000087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleolus organization | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0046785 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule polymerization | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051258 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein polymerization | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0052096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: formation by symbiont of syncytium involving giant cell for nutrient acquisition from host | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0055028 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG4302 | KOG | Microtubule-associated protein essential for anaphase spindle elongation | JGI | ISS | |
| PTHR19321 | Panther | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | JGI | ISS | |
| PF03999 | PFAM | Microtubule associated protein (MAP65/ASE1 family) | JGI | ISS | |
| UniRef100_G7L6B0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein regulator of cytokinesis n=1 Tax=Medicago truncatula RepID=G7L6B0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338A16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338A16 related cluster n=1 Tax=unknown RepID=UPI0002338A16 | SoyBase | E_val: 0 | ISS |
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Glyma09g28070 not represented in the dataset |
Glyma09g28070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g32931 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g153500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g28070.3 sequence type=transcript gene model=Glyma09g28070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATTTCCCTCGATTACATTCTCTCTCTCTGTCTTCTTTCTTCTTCCTATTACTTTTCCATTTCTCATCCCATTTCAAAAATTCACAAAACTGCATTTTCCTAGAAAAGTTATTTTCTTTTTCTCGAGAAAACCAATCCCCCCTTTCTTGCCAAGGGGGGTTTCTAGACCAAAGCAAATCACCAATCCCTTTTGTTCTCAGATACAAGTGATCCGAAATGTCTAAACCAAATCATCTTTTACAAACCAAAACAACATGTGGATCACTTCTTGATGAACTTCAGATAATATGGAATGAAGTTGGAGAGTCTGAGACTGAAAAAGATAGAATGGTGTTTGAGATTGAAGAAGAGTGTCTAGAAGTATACAGAAGAAAGGTAGATAAAGCAAATAGGTCTAGAGCTCAACTAAGGCAGGAAATTGCTGATTCTGAGGCAGAGCTTGCAAGTATCTGCTTAGCAATGGGAGAGCGACCAGTGCATGTTAGGCAGTTTGACCAAAAAGCTGTAAGCTTGAAACAAGAGCTAGCAAGAGTTCGCCAAGAGCTGGAGGAAATGCAAAAAAGGAAGTCTGGGCGTAGAAATCAATTTATAGAAGTTCAAGAACAAATTCAAAGTATCTCAAATGAAATTAGTCCAAGTATTACAGCTATTGTAGATGAAACTGATTTATCATTAAGAAAGCTTGAAGAATTGCACAGACAACTTCTTGCACTTCAAAAGGAAAAGAGTGAGCGCCTCAAGAAGGTTCAAGACCACCTGTATACCTTAAATTCTCTTTGTTCTGTGCTTGGCTTGGACTTCAAGCAGACAGTCAGTGGAGTCCATCCTAGCTTAGGAAATTCAGAGGGACCTAAGAGTGTAAATAACGATACCATCAATCAATTGGCTATTGGTATACAAGGCCTGCGAAAAGTTAAATTAAAGAGAATGCAGAGGCTCCAAGATCTAGCTTCAACAATGTTGGAGCTCTGGAATTTGATGGATACACCTATTGAAGAGCAACAAGTTTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAGTGACTGAGCCAAACAGCTTGTCTGAGAACTTCATCTATAATGTTGAGGCAGAAGTATCTAGGTTAGAAGAGTTAAAATCAAGCAAAATAAAAGAGCTTGTTTTGAAGAAAAGAGTAGAGCTAGAGGAGATTTGTCAAAAGACTCATTTGATTCCAGAAATTGGCAGTGCAATGAAATATCCTGTTGAAGCCATAGAATCCGGATCTGTAGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCGAATTGCCCGAGTAAAAGAGGAAGCTTTTTTCAGAAAAGAAATACTTGAAAAAGTTGAGAAATGGTTGTCAGCATGTGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGAAAATCGATACAATGCTGGGAGAGGTTCTCATATTACTCTCAAGAGAGCTGAGAAAGCCCGTGCCTTGGTTAACAAACTTCCAGCAATGGTAGATGCTTTAACTTCAAAAACTGTAGCATGGGAAAAGGACAAAGGCATTGAGTTCACATATGATGGTACCTGTCTGCTCTCCATGCTTGAGAACTACTCCCTATCACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGAACTAAAGAAACTTCAGGGACAAATAATAGTGGAAAAGGAGGTACTGTATGGATCTAAACCAAGCCCTTCAAAGGCCCAGAGTGTAAAAAAAGCACCTAGGTTGTCAACTAGAAGTACATCAAGTAAAAGAATCTCCCTTGGATGTCAAACCCCAAAATCTGATTCAAAAGCTACTCAGTCATTCTCCACAGGGAAGACAGACAAAGTACACCAAAATGAGCAACTAAATAACCTGGATGACGATGTTTCATGTTTATCATCAGAAGAAGATTCTCCACCGGATTCTCCCAACTACTCTTCTTGATGGCTTTTTGATAAGGCTGTATGTGGCACCAAGGAATGGTTTAGACATTTTTATTTGTTTGATGTTGAAGGTGGAGGCCAAAGCCACATCTCAGCTGCTTGATTTTCCCCTAATTTCTAGCCGCCAGAAGAGGACTTGATATTGCTGGTGTTCCTTTGAGAAAATACTCTACCGGTGCTGGAAGTGTTCTTGACATGGTATCTCCTTTGACACGACAACCTTTTTCTCCCATCTCTTTAACATTATCATCGAAAGCCAATGTCGCAAATGCTGCAAATGATACACAGAATGAGAAGTTGCAGAAAACATTAGTAGTTAGGCAATTTTCCATCTATCACTACCTCAAAGACAACCACAGTGGCCAATGAAGAGAACAAAACTCCAAAGGCAGTACCTATTCCTGACCCCACTACACCTTTGAAATTGTTGAATCCTATGAATATGTCCATGACTCCAGGTCCTGCATCAGTTCCTTATGGAGTCTCGGCTCAAGAGATTGAATATTCCTTTGAGGAAAGAAGGCTCGGTTTTGTGTTAGCATAATTTGTTTGTTTGGTTTTCCAGATTACATAGTTACATTGTTATAGTAGTTACCTGTGATGATGATCACAAGTCAAATGTAATTGTTTTTCCAGATGTACATAGTCAGAGAAATGGATGTGAACTATGGTGTGGAAAGAGCGTCTTAATGCAAAATTTTGCAATCTAATGTAATGTTTTTTTTTCTTCACAAATAGAAGTTTAATCTCAAAACT
>Glyma09g28070.2 sequence type=CDS gene model=Glyma09g28070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAAACCAAATCATCTTTTACAAACCAAAACAACATGTGGATCACTTCTTGATGAACTTCAGATAATATGGAATGAAGTTGGAGAGTCTGAGACTGAAAAAGATAGAATGGTGTTTGAGATTGAAGAAGAGTGTCTAGAAGTATACAGAAGAAAGGTAGATAAAGCAAATAGGTCTAGAGCTCAACTAAGGCAGGAAATTGCTGATTCTGAGGCAGAGCTTGCAAGTATCTGCTTAGCAATGGGAGAGCGACCAGTGCATGTTAGGCAGTTTGACCAAAAAGCTGTAAGCTTGAAACAAGAGCTAGCAAGAGTTCGCCAAGAGCTGGAGGAAATGCAAAAAAGGAAGTCTGGGCGTAGAAATCAATTTATAGAAGTTCAAGAACAAATTCAAAGTATCTCAAATGAAATTAGTCCAAGTATTACAGCTATTGTAGATGAAACTGATTTATCATTAAGAAAGCTTGAAGAATTGCACAGACAACTTCTTGCACTTCAAAAGGAAAAGAGTGAGCGCCTCAAGAAGGTTCAAGACCACCTGTATACCTTAAATTCTCTTTGTTCTGTGCTTGGCTTGGACTTCAAGCAGACAGTCAGTGGAGTCCATCCTAGCTTAGGAAATTCAGAGGGACCTAAGAGTGTAAATAACGATACCATCAATCAATTGGCTATTGGTATACAAGGCCTGCGAAAAGTTAAATTAAAGAGAATGCAGAGGCTCCAAGATCTAGCTTCAACAATGTTGGAGCTCTGGAATTTGATGGATACACCTATTGAAGAGCAACAAGTTTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAGTGACTGAGCCAAACAGCTTGTCTGAGAACTTCATCTATAATGTTGAGGCAGAAGTATCTAGGTTAGAAGAGTTAAAATCAAGCAAAATAAAAGAGCTTGTTTTGAAGAAAAGAGTAGAGCTAGAGGAGATTTGTCAAAAGACTCATTTGATTCCAGAAATTGGCAGTGCAATGAAATATCCTGTTGAAGCCATAGAATCCGGATCTGTAGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCGAATTGCCCGAGTAAAAGAGGAAGCTTTTTTCAGAAAAGAAATACTTGAAAAAGTTGAGAAATGGTTGTCAGCATGTGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGAAAATCGATACAATGCTGGGAGAGGTTCTCATATTACTCTCAAGAGAGCTGAGAAAGCCCGTGCCTTGGTTAACAAACTTCCAGCAATGGTAGATGCTTTAACTTCAAAAACTGTAGCATGGGAAAAGGACAAAGGCATTGAGTTCACATATGATGGTACCTGTCTGCTCTCCATGCTTGAGAACTACTCCCTATCACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGAACTAAAGAAACTTCAGGGACAAATAATAGTGGAAAAGGAGGTACTGTATGGATCTAAACCAAGCCCTTCAAAGGCCCAGAGTGTAAAAAAAGCACCTAGGTTGTCAACTAGAAGTACATCAAGTAAAAGAATCTCCCTTGGATGTCAAACCCCAAAATCTGATTCAAAAGCTACTCAGTCATTCTCCACAGGGAAGACAGACAAAGTACACCAAAATGAGCAACTAAATAACCTGGATGACGATGTTTCATGTTTATCATCAGCCAGAAGAGGACTTGATATTGCTGGTGTTCCTTTGAGAAAATACTCTACCGGTGCTGGAAGTGTTCTTGACATGGTATCTCCTTTGACACGACAACCTTTTTCTCCCATCTCTTTAACATTATCATCGAAAGCCAATGTCGCAAATGCTGCAAATGATACACAGAATGAGAAGTTGCAGAAAACATTAGTAGTTAGGCAATTTTCCATCTATCACTACCTCAAAGACAACCACAGTGGCCAATGA >Glyma09g28070.3 sequence type=CDS gene model=Glyma09g28070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAAACCAAATCATCTTTTACAAACCAAAACAACATGTGGATCACTTCTTGATGAACTTCAGATAATATGGAATGAAGTTGGAGAGTCTGAGACTGAAAAAGATAGAATGGTGTTTGAGATTGAAGAAGAGTGTCTAGAAGTATACAGAAGAAAGGTAGATAAAGCAAATAGGTCTAGAGCTCAACTAAGGCAGGAAATTGCTGATTCTGAGGCAGAGCTTGCAAGTATCTGCTTAGCAATGGGAGAGCGACCAGTGCATGTTAGGCAGTTTGACCAAAAAGCTGTAAGCTTGAAACAAGAGCTAGCAAGAGTTCGCCAAGAGCTGGAGGAAATGCAAAAAAGGAAGTCTGGGCGTAGAAATCAATTTATAGAAGTTCAAGAACAAATTCAAAGTATCTCAAATGAAATTAGTCCAAGTATTACAGCTATTGTAGATGAAACTGATTTATCATTAAGAAAGCTTGAAGAATTGCACAGACAACTTCTTGCACTTCAAAAGGAAAAGAGTGAGCGCCTCAAGAAGGTTCAAGACCACCTGTATACCTTAAATTCTCTTTGTTCTGTGCTTGGCTTGGACTTCAAGCAGACAGTCAGTGGAGTCCATCCTAGCTTAGGAAATTCAGAGGGACCTAAGAGTGTAAATAACGATACCATCAATCAATTGGCTATTGGTATACAAGGCCTGCGAAAAGTTAAATTAAAGAGAATGCAGAGGCTCCAAGATCTAGCTTCAACAATGTTGGAGCTCTGGAATTTGATGGATACACCTATTGAAGAGCAACAAGTTTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAGTGACTGAGCCAAACAGCTTGTCTGAGAACTTCATCTATAATGTTGAGGCAGAAGTATCTAGGTTAGAAGAGTTAAAATCAAGCAAAATAAAAGAGCTTGTTTTGAAGAAAAGAGTAGAGCTAGAGGAGATTTGTCAAAAGACTCATTTGATTCCAGAAATTGGCAGTGCAATGAAATATCCTGTTGAAGCCATAGAATCCGGATCTGTAGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCGAATTGCCCGAGTAAAAGAGGAAGCTTTTTTCAGAAAAGAAATACTTGAAAAAGTTGAGAAATGGTTGTCAGCATGTGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGAAAATCGATACAATGCTGGGAGAGGTTCTCATATTACTCTCAAGAGAGCTGAGAAAGCCCGTGCCTTGGTTAACAAACTTCCAGCAATGGTAGATGCTTTAACTTCAAAAACTGTAGCATGGGAAAAGGACAAAGGCATTGAGTTCACATATGATGGTACCTGTCTGCTCTCCATGCTTGAGAACTACTCCCTATCACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGAACTAAAGAAACTTCAGGGACAAATAATAGTGGAAAAGGAGGTACTGTATGGATCTAAACCAAGCCCTTCAAAGGCCCAGAGTGTAAAAAAAGCACCTAGGTTGTCAACTAGAAGTACATCAAGTAAAAGAATCTCCCTTGGATGTCAAACCCCAAAATCTGATTCAAAAGCTACTCAGTCATTCTCCACAGGGAAGACAGACAAAGTACACCAAAATGAGCAACTAAATAACCTGGATGACGATGTTTCATGTTTATCATCAGAAGAAGATTCTCCACCGGATTCTCCCAACTACTCTTCTTGA
>Glyma09g28070.2 sequence type=predicted peptide gene model=Glyma09g28070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKPNHLLQTKTTCGSLLDELQIIWNEVGESETEKDRMVFEIEEECLEVYRRKVDKANRSRAQLRQEIADSEAELASICLAMGERPVHVRQFDQKAVSLKQELARVRQELEEMQKRKSGRRNQFIEVQEQIQSISNEISPSITAIVDETDLSLRKLEELHRQLLALQKEKSERLKKVQDHLYTLNSLCSVLGLDFKQTVSGVHPSLGNSEGPKSVNNDTINQLAIGIQGLRKVKLKRMQRLQDLASTMLELWNLMDTPIEEQQVFQNVTCNIAASEHEVTEPNSLSENFIYNVEAEVSRLEELKSSKIKELVLKKRVELEEICQKTHLIPEIGSAMKYPVEAIESGSVDPACVLEQIELRIARVKEEAFFRKEILEKVEKWLSACDEESWLEEYNRDENRYNAGRGSHITLKRAEKARALVNKLPAMVDALTSKTVAWEKDKGIEFTYDGTCLLSMLENYSLSRQEKEQERRRQRELKKLQGQIIVEKEVLYGSKPSPSKAQSVKKAPRLSTRSTSSKRISLGCQTPKSDSKATQSFSTGKTDKVHQNEQLNNLDDDVSCLSSARRGLDIAGVPLRKYSTGAGSVLDMVSPLTRQPFSPISLTLSSKANVANAANDTQNEKLQKTLVVRQFSIYHYLKDNHSGQ* >Glyma09g28070.3 sequence type=predicted peptide gene model=Glyma09g28070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKPNHLLQTKTTCGSLLDELQIIWNEVGESETEKDRMVFEIEEECLEVYRRKVDKANRSRAQLRQEIADSEAELASICLAMGERPVHVRQFDQKAVSLKQELARVRQELEEMQKRKSGRRNQFIEVQEQIQSISNEISPSITAIVDETDLSLRKLEELHRQLLALQKEKSERLKKVQDHLYTLNSLCSVLGLDFKQTVSGVHPSLGNSEGPKSVNNDTINQLAIGIQGLRKVKLKRMQRLQDLASTMLELWNLMDTPIEEQQVFQNVTCNIAASEHEVTEPNSLSENFIYNVEAEVSRLEELKSSKIKELVLKKRVELEEICQKTHLIPEIGSAMKYPVEAIESGSVDPACVLEQIELRIARVKEEAFFRKEILEKVEKWLSACDEESWLEEYNRDENRYNAGRGSHITLKRAEKARALVNKLPAMVDALTSKTVAWEKDKGIEFTYDGTCLLSMLENYSLSRQEKEQERRRQRELKKLQGQIIVEKEVLYGSKPSPSKAQSVKKAPRLSTRSTSSKRISLGCQTPKSDSKATQSFSTGKTDKVHQNEQLNNLDDDVSCLSSEEDSPPDSPNYSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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