SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62230 | AT | Annotation by Michelle Graham. TAIR10: ERECTA-like 1 | chr5:24996433-25002130 FORWARD LENGTH=966 | SoyBase | E_val: 0 | ISS |
| GO:0001708 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell fate specification | SoyBase | N/A | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0009886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF825 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_C6ZRW6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ERECTA-like kinase n=1 Tax=Glycine max RepID=C6ZRW6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023388D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023388D7 related cluster n=1 Tax=unknown RepID=UPI00023388D7 | SoyBase | E_val: 0 | ISS |
|
Glyma09g27950 not represented in the dataset |
Glyma09g27950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g32830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g152400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g27950.1 sequence type=CDS gene model=Glyma09g27950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAAGCTGTGTTGGTGTTGGCTTTTGTGGGCAAGTTGAGAAGGCACTTTCTGCTGCTTGTTGTGGCAATGGTGCTTGTGCTGTTACTCTCTTCATTTGCTTCACCACTCAGCGATGAAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCAATGTAGCAGATGTTCTGCATGATTGGGATGATTTGCATAATGATGACTTCTGTTCTTGGCGCGGAGTCTTGTGCGACAATGTCAGCCTTACTGTGTTTTCTCTGAATTTGTCAAGCTTGAATCTTGGTGGGGAGATATCACCCGCTATTGGTGACTTGGTAACCTTGCAATCCATAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAACTTATTTATCTGGATTTGTCTGATAATCAACTATATGGTGATTTACCTTTCTCCATATCAAAGCTAAAGCAGCTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCCTCAACATTAACCCAAATTCCAAACTTGAAGACTCTTGATCTTGCACGAAATAGACTCACTGGTGAGATTCCTAGATTGCTCTATTGGAATGAAGTATTGCAGTACCTGGGGTTACGAGGGAACATGTTGAGTGGAACTCTGTCCTCTGATATCTGTCAATTGACTGGTTTGTGGTATTTTGATGTGAGAGGCAACAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGCAATCTTGGATCTTTCATACAATCAGATTTCTGGGGAGATTCCCTATAATATTGGATTTCTTCAAGTGGCTACGTTGTCGCTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTCTTTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGAGAATGAGCTAATAGGACCCATCCCTCCCATACTAGGCAATTTGTCTTATACTGGAAAGCTGTACCTTCATGGAAACATGCTTACTGGAACAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCTACAATTGAATGACAATCAAGTAGTAGGCCAAATCCCTGATGAACTTGGGAAACTCAAACATTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTTAACATTAGCTCATGCACTGCCATGAATAAGTTTAATGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTAGCAGCCTTGGAAGCTTGACTTACTTAAATCTTTCTGCAAACAATTTCAAAGGGAGTATACCTGTTGATTTGGGCCATATAATAAATCTTGACACATTGGATCTATCTAGCAATAATTTTTCAGGGTATGTTCCAGGGTCTGTTGGTTATCTTGAGCATCTTCTGACCTTGAACTTGAGCCATAATAGTCTTGAGGGTCCCTTGCCTGCTGAATTTGGGAATCTTAGAAGCATACAGATTTTTGATATGGCATTCAACTATCTGTCGGGTAGCATCCCTCCGGAAATTGGTCAGCTGCAGAATCTTGCGTCTCTGATTTTGAACAACAATGATCTGAGTGGGAAGATTCCAGATCAGCTTACAAATTGCTTAAGTCTTAACTTCCTGAATGTCTCATACAATAACTTATCTGGGGTCATTCCTCTCATGAAGAACTTCTCATGGTTTTCTGCTGACAGCTTCATGGGAAATCCATTATTATGTGGAAATTGGTTGGGATCCATATGTGATCCTTACATGCCAAAATCCAAAGTGGTTTTTTCAAGGGCTGCAATTGTTTGTCTCATTGTTGGTACCATCACATTATTGGCCATGGTAATTATAGCAATCTACAGATCAAGCCAATCAATGCAATTGATTAAAGGATCTAGTGGAACTGGGCAAGGCCCCCCCAAGCTTGTAATTCTTCACATGGGCTTGGCCATCCATACCTTTGATGACATTATGAGAGTTACTGAGAATCTCAATGCGAAGTATATTGTAGGGTATGGTGCCTCTGGTACTGTGTACAAGTGTGCTTTAAAGAATTCCCGGCCAATTGCAATTAAGCGACCATACAACCAGCATCCACACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAATATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAGGCACGCCTGAGGATTGCCATGGGAGCTGCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATCATTCACAGGGATATAAAGTCCTCAAACATCTTGCTAGATGAAAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACCACAAGAACTCATGTGTCAACGTTTGTTCTTGGAACAATAGGCTATATTGACCCTGAGTATGCCCGGACATCTAGGCTGAATGAAAAATCCGATGTGTATAGCTTTGGAATTGTTCTACTTGAGCTACTAACTGGGAAGAAAGCAGTGGACAACGATTCCAACTTGCATCACTTAATATTATCCAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACGTTTCAGCTTGCTCTTCTTTGCACAAAAAGAAATCCTTCCGAGAGGCCAACCATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGTAAAAATATATTTGTACCTTCTTCAAACACCATTGATTATGCACAATTTGTGATTCAAAAGGTAAACAAAAACAGCCTTCACACCCCACAAATGGATCAATGGTTTGTTCGCTTTGAGGATGTTGTATCAAATAACAGCCTCTAG
>Glyma09g27950.1 sequence type=predicted peptide gene model=Glyma09g27950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKAVLVLAFVGKLRRHFLLLVVAMVLVLLLSSFASPLSDEGQALMKIKASFSNVADVLHDWDDLHNDDFCSWRGVLCDNVSLTVFSLNLSSLNLGGEISPAIGDLVTLQSIDLQGNKLTGQIPDEIGNCAELIYLDLSDNQLYGDLPFSISKLKQLVFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSSDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFAILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVFGLMQALAILDLSENELIGPIPPILGNLSYTGKLYLHGNMLTGTIPPELGNMSRLSYLQLNDNQVVGQIPDELGKLKHLFELNLANNHLEGSIPLNISSCTAMNKFNVHGNHLSGSIPLSFSSLGSLTYLNLSANNFKGSIPVDLGHIINLDTLDLSSNNFSGYVPGSVGYLEHLLTLNLSHNSLEGPLPAEFGNLRSIQIFDMAFNYLSGSIPPEIGQLQNLASLILNNNDLSGKIPDQLTNCLSLNFLNVSYNNLSGVIPLMKNFSWFSADSFMGNPLLCGNWLGSICDPYMPKSKVVFSRAAIVCLIVGTITLLAMVIIAIYRSSQSMQLIKGSSGTGQGPPKLVILHMGLAIHTFDDIMRVTENLNAKYIVGYGASGTVYKCALKNSRPIAIKRPYNQHPHNSREFETELETIGNIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAMGAAEGLAYLHHDCNPRIIHRDIKSSNILLDENFEARLSDFGIAKCLSTTRTHVSTFVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKRNPSERPTMHEVARVLASLLPAPPSKNIFVPSSNTIDYAQFVIQKVNKNSLHTPQMDQWFVRFEDVVSNNSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
