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Report for Sequence Feature Glyma09g27940

Feature Type:gene_model
Chromosome:Gm09
Start:34892968
stop:34904685
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g27940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51710AT Annotation by Michelle Graham. TAIR10: K+ efflux antiporter 5 | chr5:21004566-21008580 REVERSE LENGTH=565 SoyBaseE_val: 0ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006813GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transport SoyBaseN/AISS
GO:0006814GO-bp Annotation by Michelle Graham. GO Biological Process: sodium ion transport SoyBaseN/AISS
GO:0010351GO-bp Annotation by Michelle Graham. GO Biological Process: lithium ion transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0015079GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity SoyBaseN/AISS
GO:0015299GO-mf Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity SoyBaseN/AISS
GO:0015386GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity SoyBaseN/AISS
KOG1650 KOG Predicted K+/H+-antiporter JGI ISS
PTHR16254Panther POTASSIUM/PROTON ANTIPORTER-RELATED JGI ISS
PF00999PFAM Sodium/hydrogen exchanger family JGI ISS
UniRef100_F4KDC7UniRef Annotation by Michelle Graham. Most informative UniRef hit: K(+) efflux antiporter 5 n=1 Tax=Arabidopsis thaliana RepID=F4KDC7_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002338A13UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A13 related cluster n=1 Tax=unknown RepID=UPI0002338A13 SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g27940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g27940
ParalogEvidenceComments
Glyma16g32821 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g27940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g152300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g27940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g27940
>Glyma09g27940.1   sequence type=CDS   gene model=Glyma09g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACGGCGATTCTGGCCCCGAATAAACGGCACGAGTTTGGGCTCTGGTGCTGCGTTTTGTGCCTCGCGATCTGCGCTAGGGTTTGCGGCGGGGCCAGATCCGACCAGGAAACGCGGGAGAGGTTCTACGGGAACATGCCCAATGGCTCCTCGCCCGATTCCAACAACACCTTGGCCAAGATGTTCGATCGCGTTCTCGAGAAGGAGTTCTCCGAGAATGACCAACCAGAAGAACCTGACAAAAACAGCTTCAATAGCAGTGTAGCTGATCAGCAGGCTGTATTGGAGACTGTAGCAAAAATTACTCATGATAAAGCAAAGAGAAATGATACACATGAGGGAAATGCCACAAGAGCATTTCAGTTTCAAGATGTATTCTCACTGGAAAATGAAGATTCTGATGATGTGACAACTTTGATTGACAAAAAGGACAATGTCTTTGTGATGTCAAACAAGAAATCCAAATATCCTGTGCTTCAAGTGGATTTGAGGTTAATATCAGATTTGGTGGTTGTCATAGTTTCTGCAGCCATTGGTGGAATTGTCTTTTCCTGTTTGGGGCAACCGGTTATTGTGGGCTATCTTCTTGCAGGCTCCCTTATTGGACCAGGCGGTTTGAAGTTCATTAGTGAAATGGTGCAGGTTGAGACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAGTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTACTTCAAATTATCATTTTTATGTTCATGTGTGGCATTCTTTCCATGTTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTATCAATGTCATCAACAGCAGTGGTGGTGAAGTTTTTAGTGGAGCGGAATAGTAATAATGCTCTCCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGGATTGTGCAGTGGGTTTACTATTTGCTTTGCTCCCAGTTTTGGGTGGTAACAGTGGCCTTTTACAAGGAATAATGTCAATGGGAAAACTGTTGCTAGTGTTGTCTTTGTATATCACTGCTACGTCTGTATTGTCTTGGACATTTGTTCCTCGCTTTCTTAAACTGATGATGCGGCTGTCATCTCAGACAAATGAACTTTATCAGCTAGCCGCTGTTGCTTTCTGCTTGTTATCTGCATGGTGCAGTGATAAGCTTGGCCTTAGTCTCGAGTTGGGTTCATTTATGGCTGGTGTTATGATTTCCACAACAGACTTTGCTCAACATACTTTGGACCAGGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTTATTCATGTGCACTTCCTTTGGAACCATGTGGATATCTTGCTGGCATCTGTTATTCTGGTTGTAGTTGTTAAAACTGCTGTTGCTGTTTTAGTTACAAAGGCCTTTGGTTATAGCCTTAAGACATCATTTATTGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAGGGGAAAATGTATCTTCTTCTTCTAGGGACTACAGCTCTTAGTCTGGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTTCCCTCTGAAAGTAGCTCACAAATTGAGGGAAAAGCTTCTGTGATTGAAGGAAACAGAATGTTGTGA
Predicted protein sequences of Glyma09g27940
>Glyma09g27940.1   sequence type=predicted peptide   gene model=Glyma09g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTAILAPNKRHEFGLWCCVLCLAICARVCGGARSDQETRERFYGNMPNGSSPDSNNTLAKMFDRVLEKEFSENDQPEEPDKNSFNSSVADQQAVLETVAKITHDKAKRNDTHEGNATRAFQFQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIVFSCLGQPVIVGYLLAGSLIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLAKLKAVGPVAVLGGLLQIIIFMFMCGILSMLFGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSNNALHVQVTIGTLIFQDCAVGLLFALLPVLGGNSGLLQGIMSMGKLLLVLSLYITATSVLSWTFVPRFLKLMMRLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVVVVKTAVAVLVTKAFGYSLKTSFIVGISLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPAVMNLGVLMHWFPSESSSQIEGKASVIEGNRML*






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