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Report for Sequence Feature Glyma09g27827

Feature Type:gene_model
Chromosome:Gm09
Start:34782263
stop:34783494
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g27827
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27610AT Annotation by Michelle Graham. TAIR10: DIRP ;Myb-like DNA-binding domain | chr5:9764852-9769706 FORWARD LENGTH=971 SoyBaseE_val: 3.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR21689Panther LIN-9 RELATED JGI ISS
PTHR21689:SF2Panther ALWAYS EARLY JGI ISS
UniRef100_B9RT24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Always early, putative n=1 Tax=Ricinus communis RepID=B9RT24_RICCO SoyBaseE_val: 7.00E-19ISS
UniRef100_I1MRG3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRG3_SOYBN SoyBaseE_val: 8.00E-34ISS

Expression Patterns of Glyma09g27827
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g27827 not represented in the dataset
Glyma09g27827 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g27827 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g151600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g27827
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g27827
>Glyma09g27827.1   sequence type=CDS   gene model=Glyma09g27827   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATTCTAGGAAATCTAGAAGCATAAATAAGAGGTTTTCTACTGTTCGTGTGGCTACATCTAGTAAAGACAAAATTACAGAGAATGCTAGCAAAAATAGGCTGAAGAAGAGAAAATTGATTGACATGTTAGGGCCACAATGGAATAAGAAGGAGCTTGAGCATTTCTATGAAGCTTATAGTAAATATGGGAAAGATTGGAAGAAGCTAGAAGTTGGCCCAAATCCACGAATGTAA
Predicted protein sequences of Glyma09g27827
>Glyma09g27827.1   sequence type=predicted peptide   gene model=Glyma09g27827   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSRKSRSINKRFSTVRVATSSKDKITENASKNRLKKRKLIDMLGPQWNKKELEHFYEAYSKYGKDWKKLEVGPNPRM*






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