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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55830 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr3:20715101-20717133 FORWARD LENGTH=334 | SoyBase | E_val: 2.00E-124 | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0035251 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity | SoyBase | N/A | ISS |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | ISS | |
| PTHR11062:SF23 | Panther | JGI | ISS | ||
| PF09258 | PFAM | Glycosyl transferase family 64 domain | JGI | ISS | |
| UniRef100_B9SLJ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exostosin-2, putative n=1 Tax=Ricinus communis RepID=B9SLJ9_RICCO | SoyBase | E_val: 5.00E-122 | ISS |
| UniRef100_I1L3H8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3H8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g27660 not represented in the dataset |
Glyma09g27660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g32650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g150200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g27660.2 sequence type=transcript gene model=Glyma09g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATACATACAACAAATGATACGTGTTAAAATCGTTTCATGTGTCGTTTTGTGGTTCTATGACCAACAAGCCACACGTCGTTTTGAAGCAGTGACCGACCGTGCATCCCTTTGTAGTTTGAAGCGCTCAACACGCGCAACGACGATGATGCAAACCAATATCACCACCACAATCCTCATCGCGTTCTCTTCGGTCAATTCCTCGAATGTTCTACCTTGAGCCATGTCCAACCTCGTTCAGATTCGCGTCGCCGCCGACGCAGGCGACGGCTTCGACTCTCCGGCGAAGCAGAAAGCCGCCAACCGCAGCGCCTACAGCATTCGCCCCTTTCTCTACCTCCGCCGCGCCAAACAGTTCCTCGGCGCCGCCAAGTTCAAGCTCTTCTTAGTTCTATTTGCTCTCTCCGTCATCGTTTTCGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCAATCCTCTTCGGTTTCTTCCACTTCAAGGGGTGGTTATACTGTGCTTATAAACACTTGGAGGCAAAAATCTCTTCTGAAGCAAACTGTTGCTCATTATTCATCATGTCAAAGTGTGGATGCAATACATTTGGTGTGGAGTGAAAGTGAACAACCATCCGAGAAGCTGAAAACATATCTGAATAAGATTGTGGTTTTGAAGTCTCAGAAAGCTCACAAGCCAAACTTTAGATTTGACATCAATGCAGATGGTGAGCCAAACAGCAGGTTTAAGCCAATAAAGGACCTCAAGACAGACGCAATTTTCTCAGTTGATGATGATGTGGTTGTTCCATGTTCTACTCTAGATTTTGCTTTCTCTGTCTGGCAAAGTGCACCATTTACGATGGTTGGATTTGTTCCTCGAATGCACTGGCTGGATAAGGAGCAAAATAATGCTGCATATTACAGGTATGGAGGATGGTGGTCTGTTTGGTGGATGGGCACTTATAGCATGGTTCTCTCAAAGGCTGCATTCTTTCACAGGAAATACTTGGATTTATATACTCATGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGAACTTGTGAAGACATTGCAATGTCCCTTTATGTTGCTAATGCTACAAGTGGTCCTCCAATATGGGTGAAAGGTGCATTTTGTTCTTTACTTTTAAGGATAGGATTCAGTTTGCCGTGTGTGGTCTACAGTAATAACTTAAATTTAGAAGAAATTATTTGTTGAAGTTTCGGTGCATGTATTTTTCCAAGTAAACTAATTTTTTGCATATGCTATCGAGCTACAGATTTTGTTC
>Glyma09g27660.1 sequence type=CDS gene model=Glyma09g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACCTCGTTCAGATTCGCGTCGCCGCCGACGCAGGCGACGGCTTCGACTCTCCGGCGAAGCAGAAAGCCGCCAACCGCAGCGCCTACAGCATTCGCCCCTTTCTCTACCTCCGCCGCGCCAAACAGTTCCTCGGCGCCGCCAAGTTCAAGCTCTTCTTAGTTCTATTTGCTCTCTCCGTCATCGTTTTCGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCAATCCTCTTCGGTTTCTTCCACTTCAAGGGGTGGTTATACTGTGCTTATAAACACTTGGAGGCAAAAATCTCTTCTGAAGCAAACTGTTGCTCATTATTCATCATGTCAAAGTGTGGATGCAATACATTTGGTGTGGAGTGAAAGTGAACAACCATCCGAGAAGCTGAAAACATATCTGAATAAGATTGTGGTTTTGAAGTCTCAGAAAGCTCACAAGCCAAACTTTAGATTTGACATCAATGCAGATGGTGAGCCAAACAGCAGGTTTAAGCCAATAAAGGACCTCAAGACAGACGCAATTTTCTCAGTTGATGATGATGTGGTTGTTCCATGTTCTACTCTAGATTTTGCTTTCTCTGTCTGGCAAAGTGCACCATTTACGATGGTTGGATTTGTTCCTCGAATGCACTGGCTGGATAAGGAGCAAAATAATGCTGCATATTACAGGTATGGAGGATGGTGGTCTGTTTGGTGGATGGGCACTTATAGCATGGTTCTCTCAAAGGCTGCATTCTTTCACAGGAAATACTTGGATTTATATACTCATGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGAACTTGTGAAGACATTGCAATGTCCCTTTATGTTGCTAATGCTACAAGTGGTCCTCCAATATGGGTGAAAGGCAAAATCTATGAGATTGGTGCATCGGGTATTAGCAGTCTGAGAGGGCATAGCAACAGGAGAAACAAATGTCTCAATGACTTGATATCACTATACGGAACTCTTCCACTTGTGTCAACTAATGTGAAAGCAGTTAGTGCTAGAAAAGAATGGTTATGGTAG >Glyma09g27660.2 sequence type=CDS gene model=Glyma09g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACCTCGTTCAGATTCGCGTCGCCGCCGACGCAGGCGACGGCTTCGACTCTCCGGCGAAGCAGAAAGCCGCCAACCGCAGCGCCTACAGCATTCGCCCCTTTCTCTACCTCCGCCGCGCCAAACAGTTCCTCGGCGCCGCCAAGTTCAAGCTCTTCTTAGTTCTATTTGCTCTCTCCGTCATCGTTTTCGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCAATCCTCTTCGGTTTCTTCCACTTCAAGGGGTGGTTATACTGTGCTTATAAACACTTGGAGGCAAAAATCTCTTCTGAAGCAAACTGTTGCTCATTATTCATCATGTCAAAGTGTGGATGCAATACATTTGGTGTGGAGTGAAAGTGAACAACCATCCGAGAAGCTGAAAACATATCTGAATAAGATTGTGGTTTTGAAGTCTCAGAAAGCTCACAAGCCAAACTTTAGATTTGACATCAATGCAGATGGTGAGCCAAACAGCAGGTTTAAGCCAATAAAGGACCTCAAGACAGACGCAATTTTCTCAGTTGATGATGATGTGGTTGTTCCATGTTCTACTCTAGATTTTGCTTTCTCTGTCTGGCAAAGTGCACCATTTACGATGGTTGGATTTGTTCCTCGAATGCACTGGCTGGATAAGGAGCAAAATAATGCTGCATATTACAGGTATGGAGGATGGTGGTCTGTTTGGTGGATGGGCACTTATAGCATGGTTCTCTCAAAGGCTGCATTCTTTCACAGGAAATACTTGGATTTATATACTCATGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGAACTTGTGAAGACATTGCAATGTCCCTTTATGTTGCTAATGCTACAAGTGGTCCTCCAATATGGGTGAAAGGTGCATTTTGTTCTTTACTTTTAAGGATAGGATTCAGTTTGCCGTGTGTGGTCTACAGTAATAACTTAAATTTAGAAGAAATTATTTGTTGA
>Glyma09g27660.1 sequence type=predicted peptide gene model=Glyma09g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNLVQIRVAADAGDGFDSPAKQKAANRSAYSIRPFLYLRRAKQFLGAAKFKLFLVLFALSVIVFVSSRLSSWMGWNPHQSSSVSSTSRGGYTVLINTWRQKSLLKQTVAHYSSCQSVDAIHLVWSESEQPSEKLKTYLNKIVVLKSQKAHKPNFRFDINADGEPNSRFKPIKDLKTDAIFSVDDDVVVPCSTLDFAFSVWQSAPFTMVGFVPRMHWLDKEQNNAAYYRYGGWWSVWWMGTYSMVLSKAAFFHRKYLDLYTHEMSPSIQDYVSRERTCEDIAMSLYVANATSGPPIWVKGKIYEIGASGISSLRGHSNRRNKCLNDLISLYGTLPLVSTNVKAVSARKEWLW* >Glyma09g27660.2 sequence type=predicted peptide gene model=Glyma09g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNLVQIRVAADAGDGFDSPAKQKAANRSAYSIRPFLYLRRAKQFLGAAKFKLFLVLFALSVIVFVSSRLSSWMGWNPHQSSSVSSTSRGGYTVLINTWRQKSLLKQTVAHYSSCQSVDAIHLVWSESEQPSEKLKTYLNKIVVLKSQKAHKPNFRFDINADGEPNSRFKPIKDLKTDAIFSVDDDVVVPCSTLDFAFSVWQSAPFTMVGFVPRMHWLDKEQNNAAYYRYGGWWSVWWMGTYSMVLSKAAFFHRKYLDLYTHEMSPSIQDYVSRERTCEDIAMSLYVANATSGPPIWVKGAFCSLLLRIGFSLPCVVYSNNLNLEEIIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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