Glyma09g27610 - SoyBase

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Report for Sequence Feature Glyma09g27610

Feature Type:	gene_model
Chromosome:	Gm09
Start:	34480430
stop:	34482242
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g27610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25410	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:12985772-12987149 FORWARD LENGTH=230	SoyBase	E_val: 9.00E-31	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9R9K5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R9K5_RICCO	SoyBase	E_val: 1.00E-35	ISS
UniRef100_I1L3H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L3H1_SOYBN	SoyBase	E_val: 3.00E-158	ISS

Expression Patterns of Glyma09g27610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g27610

Paralog	Evidence	Comments
Glyma16g32610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g27610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g149900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g27610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g27610

Limit To All Plant Sequences

>Glyma09g27610.2   sequence type=transcript   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGATTATTCTCTCCCCTACCTTAATTAAGATCATCAGATCTTGTATGATCCTCTGATGCTGATGCAGTGATCTTTGTACAAGTGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGAAATCTTGGGAAGATATATTATTTGGAGATGTTTCTGATCGTATATACTATTAACTTGAGTGATTTGTACAGCGGTGTACTTGTTATTTATCTGGTATAATTGTTGGTGAAGTACAAAGGGTAGCTAGTTGATTATTCCATTCGCGCAATACTCCACGAGCACGAGGTCATTTTTATCTATTTTCATGGAAGTTAGATCAAACTCATGGATAATATTCATGGTACTGTTCAATGTTTTGTGTGCACGCTTCTGCATTTAGTTCTTACAGTAGTTGTTTTTCAATAGTCGCATCATAAAATTTGAATTTCCTGTTGTATATACACTGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTACAATGTTGTTCATCCATTATCGTTTCTTCCTCGTCAATTGCTGTAATAATTGTACCTTTGGTTCTGATACTTATGACAAAATTTGAATTAGGGAAACACAGACGTTTGTCCATTC

>Glyma09g27610.3   sequence type=transcript   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGATATGGCAGGTGAGATGTATTCTGATCTTATATGGGAAGGATTTCAGAATCTTAGCATATCAGGTCAATGGAAAGTAGTCCTCAAACCCTAACAACCAAATACACTTGATTTTCTTGCTTTGGTATCTTTTGCCACCCCCCAAAAAGATAGCATTCACAATGATGAATCCTCTCCACCCCAATGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGAAATCTTGGGAAGATATATTATTTGGAGATGTTTCTGATCGTATATACTATTAACTTGAGTGATTTGTACAGCGGTGTACTTGTTATTTATCTGGTATAATTGTTGGTGAAGTACAAAGGGTAGCTAGTTGATTATTCCATTCGCGCAATACTCCACGAGCACGAGGTCATTTTTATCTATTTTCATGGAAGTTAGATCAAACTCATGGATAATATTCATGGTACTGTTCAATGTTTTGTGTGCACGCTTCTGCATTTAGTTCTTACAGTAGTTGTTTTTCAATAGTCGCATCATAAAATTTGAATTTCCTGTTGTATATACACTGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTACAATGTTGTTCATCCATTATCGTTTCTTCCTCGTCAATTGCTGTAATAATTGTACCTTTGGTTCTGATACTTATGACAAAATTTGAATTAGGGAAACACAGACGTTTGTCCATTCTT

Coding sequences of Glyma09g27610

Limit To All Plant Sequences

>Glyma09g27610.1   sequence type=CDS   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTTGTACAAGTGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA

>Glyma09g27610.2   sequence type=CDS   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA

>Glyma09g27610.3   sequence type=CDS   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA

Predicted protein sequences of Glyma09g27610

Limit To All Plant Sequences

>Glyma09g27610.1   sequence type=predicted peptide   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFVQVKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*

>Glyma09g27610.2   sequence type=predicted peptide   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*

>Glyma09g27610.3   sequence type=predicted peptide   gene model=Glyma09g27610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*

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