SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01770 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632 | SoyBase | E_val: 1.00E-76 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF07287 | PFAM | Protein of unknown function (DUF1446) | JGI | ISS | |
| UniRef100_I1L3E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3E0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LQ79 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T1N6.18 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LQ79_ARATH | SoyBase | E_val: 5.00E-74 | ISS |
|
Glyma09g27040 not represented in the dataset |
Glyma09g27040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g27040.1 sequence type=CDS gene model=Glyma09g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACCCCAAGATGAAGAAGAGATCCATAACTGTTTGATCAAGCTGAGAAGTAATCTGGAAAGGCGAAGGGATAAGGTCTACATTGGTTGTAGAGCTGGGTTTGGTGGTGACAAGCCCTTGGCTGCTCTTAAGTTGCTTCAAAGACGAACTCTTGCTGATCATTATCAAATCATGATGTCTGGTGGTGATGTTTCTAACTGGATACATATGTTGCTGCCTTTGGCTTTGGAAAGAGGAACTTGCATAATTACCAATATGGGTGCAAAAGATATTATAATTTATATGTTCAACCAAAAGGTCTTAGAAATAGCTAATAGCCTGGTTCTCAATGTTTCTGTTGCTGTGGCTCACGAGGAGTGTCCTAATAAGGAGATTTTTCTGGTTAAAACAATGATAGTTATTAACCTTATGAGCTCTACATTTATTTATTCAAATTTTTTTCTAGTCTTTAGCACTTTTGCAAGCACCTACTTGGGAGCTGCTCCTATTGTTCGTTGCCTTGAAAAGTACCAACCAAATGTAATAATTACATCGAGAATTGCATATGCTACTTTATTCTTAGCACCTATGGTTTATGAGCTAGGATGGAACTGGGATGAATTAGAACATCTAGCTCAAGGATCTTTGGCTGGCCATCTTCTAGAATGTGGTTGCCAACTCACGGGGGGTATTTCATGCATCCAGACTGTGACCTCCAAACATTCTTTTGTTTTTTGTTTTGTTTTGAAAAGCATTCCTGTGGTTAATGGTTTTTATTCTGAATATAATATGATTGACAATTACAGCGATAAACGATGTAAAAACTCTTCAAATTCTACATCGAAAATCTCCTCATACTACATCGGTTTGACGATAAACGATGTAAAAACCTTTCATTTTCTACATCGGTTGATTGATAATCGATGTAGCGACGTTACTGTCATTCTACATCGGTTGAACTATAACCGCCGATGTAATAACCTTTCATTTTCTACATCGGTTGACTGA
>Glyma09g27040.1 sequence type=predicted peptide gene model=Glyma09g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPQDEEEIHNCLIKLRSNLERRRDKVYIGCRAGFGGDKPLAALKLLQRRTLADHYQIMMSGGDVSNWIHMLLPLALERGTCIITNMGAKDIIIYMFNQKVLEIANSLVLNVSVAVAHEECPNKEIFLVKTMIVINLMSSTFIYSNFFLVFSTFASTYLGAAPIVRCLEKYQPNVIITSRIAYATLFLAPMVYELGWNWDELEHLAQGSLAGHLLECGCQLTGGISCIQTVTSKHSFVFCFVLKSIPVVNGFYSEYNMIDNYSDKRCKNSSNSTSKISSYYIGLTINDVKTFHFLHRLIDNRCSDVTVILHRLNYNRRCNNLSFSTSVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
