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Report for Sequence Feature Glyma09g27030

Feature Type:gene_model
Chromosome:Gm09
Start:33727246
stop:33728610
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g27030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65140AT Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:26020411-26022077 REVERSE LENGTH=325 SoyBaseE_val: 4.00E-102ISS
GO:0005992GO-bp Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004805GO-mf Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity SoyBaseN/AISS
PTHR10788Panther TREHALOSE-6-PHOSPHATE SYNTHASE JGI ISS
PF02358PFAM Trehalose-phosphatase JGI ISS
UniRef100_B9T4H6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9T4H6_RICCO SoyBaseE_val: 4.00E-106ISS
UniRef100_I1L3D9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L3D9_SOYBN SoyBaseE_val: 2.00E-141ISS

Expression Patterns of Glyma09g27030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g27030 not represented in the dataset
Glyma09g27030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g27030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma09g27030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g27030
>Glyma09g27030.1   sequence type=CDS   gene model=Glyma09g27030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCACCATCCATCGGCATTAGACATGTTTGACAAAATTATTGACGCGTCAAAGGGAAAACAATTTTTCATGTTTTTGGACTATGATGACACGTTGTCTCCTATAGTCGACGACCCTGACCGTGCTTTCATAAAAACAATGAGGGAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGCTATATTATGTAGGAAGCCATGGCATGGATATTAAAGGACCAACAACAACCTCCAAATACAACAAAGATAGCAAAGCTGAGCCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCTTGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTATGTCTTTCAGTCCATTTTCGTTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAGCTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTAGGTGAGTTTTAG
Predicted protein sequences of Glyma09g27030
>Glyma09g27030.1   sequence type=predicted peptide   gene model=Glyma09g27030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LHHPSALDMFDKIIDASKGKQFFMFLDYDDTLSPIVDDPDRAFIKTMRELARCFPTAIVTGRCKDKLYYVGSHGMDIKGPTTTSKYNKDSKAEPILCQPASDFLPLIDEVYQQLVEKTKSTPGALVENNKLCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGEF*






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