SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62090 | AT | Annotation by Michelle Graham. TAIR10: SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816 | SoyBase | E_val: 0 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0048467 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gynoecium development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10378 | Panther | LIM DOMAIN BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR10378:SF6 | Panther | JGI | ISS | ||
| UniRef100_I1L3D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L3D5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6H974 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SEU1 protein n=1 Tax=Antirrhinum majus RepID=Q6H974_ANTMA | SoyBase | E_val: 0 | ISS |
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Glyma09g26960 not represented in the dataset |
Glyma09g26960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g32250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g26960.2 sequence type=transcript gene model=Glyma09g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGCAGCAGCAACAACAACAAATGCAATTGAGGCAGCAATTACAACAACAAGTGATGCAGCCCTCTTCTGCTGGCAAGCGTCCATATGACAGTGGTGTTAGTGGGGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAAAGGCCAAATGATAATAGTATTGCCTATTGGATAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGCAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTGTTACCTAGGCTTAATGAAATAAAATTTGGCAGTGGAGTAATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAACAAGATTTCCTTCTGGTGCGATGATGTTGGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGTCGCTTCGTGTTGTTCGTGAAGGTCAACTTCGCATCATATTCACTCAAGACTTGAAGATCTTATCATGGGAGTTCTGTGCAAGACGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAATTCAGGTAGCTCAAAAATGTCAGAGTACAATTGCTGAAAGTGGGGCGGATTGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGATATCACAGCAATCACTTAATGACTTAGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGAGCACAAAATTGGTGCAATTGAGAGTTTGAAAAATTATCCTCTACTAGCAACAGCCTCAAAGGTCCAGATGCAAAAGATGCAGGAAATGGAACAGCTGGCAAATGTACAAGGTCTGCCAACTGATCGAAACACACTCAATAAGCTAATGGCACTGAATCCTGGAATGAACAACCATATGAACAACACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCACCCCAAGCTGCTTTAGCACTGAACAACTACCCAAATCTTCTGATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCACTTCATCGAGAAGGGTCCTTGTTCAATAATTCAAACCTGAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTGCTTTAATTCCAGGCTCAATGCAGAACTCGCCTGTAGGCAGTTTCCCAAGTCCCCATCTACCCCCACAGCAGCAGCAGCAACAACAAGAAGTCCTTCAACAGCGCACATTAAGTGCAAATGGTTTACTTCAACAAAATCATTCACCGGGTTCCCAAGGAAATCAAACTCTACAGCAGCAGCAGATGATCCAGCAACTGCTGCAGGAGATGTCAAATAACAATGGGGGAATGCAACCACAGTCTCTTGGTGGACTCACTGCAAATGGGAATATTGCAAAGAATGCAATGGGTTTTGGGGGCCATACTCCATCCTTAAGTGGAGGTTCTGCCAATGTTCCTGGAAACAATGGACCTATGTCAAGGAATAATAGCTTCAAAACAGCTTCAAATAGTGATTCTTCTGCAGCAGGTGGCAACAATGGATTCAATCAGAGAACATCTGATATGCCACAAAATCTACATTTGCAAGATGTGGTTCAGGATATTGGTAATGAGTTCTCGGATAACCCCTTCTTTAACAGTGATCTTGATGACAACATGGGTTTCAGCTGGAAGGCATGA
>Glyma09g26960.1 sequence type=CDS gene model=Glyma09g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACCTTCTCGGGTGTCCGGAAGTTTAACTCGATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAATATAGTTAACTCTCACTTAAGCTCATCTTTTGTTAACTCGTCTAGCACGGTTCCAGGAGCTGGTTGTTCAAACCTCGGTCCAGTTTCTGGGGATATTAATAATGCAGTTTTGAACACTGTGACAAACTCAGCACCAAGTGTTGGAGCCAGTTCTTTAGTCACGGATGCAAATTCTGCTCTCTCTAGTGGCCCCCATTTGCAGAGAAGCGCCAGTGTTAACACAGACTCTTACTTACGATTACCTGCCTCACCTATGTCATTTACATTGAATAATATTAGTATTTCTGGCTCATCAAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCCGCAGGGTGCTTCAAGTGCTACATCTTTGCCTGCATCACAAACTAGACCATCTCTACTCCAAATGGGCGCACAAGTCCCAAGATCTTTCATTCAAGATCCAAATAATATGTCTCATCTGTCAAAGAAACCTAGAATGGATATCAAACAGGAAGATATAATGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTCCAGGGTCGTAATCCACAGTTACAGGCTTTTCTTCAGCAGCAACAGAGACTAAGACAACAACAAATCTTTCAGTCAATGCCACAATTGCAGCGAGCGCACTTGCAACAACAGCGGCAGCAATTACAACAACAAGTGATGCAGCCCTCTTCTGCTGGCAAGCGTCCATATGACAGTGGTGTTAGTGGGGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAAAGGCCAAATGATAATAGTATTGCCTATTGGATAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGCAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTGTTACCTAGGCTTAATGAAATAAAATTTGGCAGTGGAGTAATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAACAAGATTTCCTTCTGGTGCGATGATGTTGGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGTCGCTTCGTGTTGTTCGTGAAGGTCAACTTCGCATCATATTCACTCAAGACTTGAAGATCTTATCATGGGAGTTCTGTGCAAGACGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAATTCAGGTAGCTCAAAAATGTCAGAGTACAATTGCTGAAAGTGGGGCGGATTGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGATATCACAGCAATCACTTAATGACTTAGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGAGCACAAAATTGGTGCAATTGAGAGTTTGAAAAATTATCCTCTACTAGCAACAGCCTCAAAGGTCCAGATGCAAAAGATGCAGGAAATGGAACAGCTGGCAAATGTACAAGGTCTGCCAACTGATCGAAACACACTCAATAAGCTAATGGCACTGAATCCTGGAATGAACAACCATATGAACAACACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCACCCCAAGCTGCTTTAGCACTGAACAACTACCCAAATCTTCTGATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCACTTCATCGAGAAGGGTCCTTGTTCAATAATTCAAACCTGAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTGCTTTAATTCCAGGCTCAATGCAGAACTCGCCTGTAGGCAGTTTCCCAAGTCCCCATCTACCCCCACAGCAGCAGCAGCAACAACAAGAAGTCCTTCAACAGCGCACATTAAGTGCAAATGGTTTACTTCAACAAAATCATTCACCGGGTTCCCAAGGAAATCAAACTCTACAGCAGCAGCAGATGATCCAGCAACTGCTGCAGGAGATGTCAAATAACAATGGGGGAATGCAACCACAGTCTCTTGGTGGACTCACTGCAAATGGGAATATTGCAAAGAATGCAATGGGTTTTGGGGGCCATACTCCATCCTTAAGTGGAGGTTCTGCCAATGTTCCTGGAAACAATGGACCTATGTCAAGGAATAATAGCTTCAAAACAGCTTCAAATAGTGATTCTTCTGCAGCAGGTGGCAACAATGGATTCAATCAGAGAACATCTGATATGCCACAAAATCTACATTTGCAAGATGTGGTTCAGGATATTGGTAATGAGTTCTCGGATAACCCCTTCTTTAACAGTGATCTTGATGACAACATGGGTTTCAGCTGGAAGGCATGA >Glyma09g26960.2 sequence type=CDS gene model=Glyma09g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGAGGCAGCAATTACAACAACAAGTGATGCAGCCCTCTTCTGCTGGCAAGCGTCCATATGACAGTGGTGTTAGTGGGGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAAAGGCCAAATGATAATAGTATTGCCTATTGGATAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGCAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTGTTACCTAGGCTTAATGAAATAAAATTTGGCAGTGGAGTAATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAACAAGATTTCCTTCTGGTGCGATGATGTTGGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGTCGCTTCGTGTTGTTCGTGAAGGTCAACTTCGCATCATATTCACTCAAGACTTGAAGATCTTATCATGGGAGTTCTGTGCAAGACGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAATTCAGGTAGCTCAAAAATGTCAGAGTACAATTGCTGAAAGTGGGGCGGATTGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGATATCACAGCAATCACTTAATGACTTAGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGAGCACAAAATTGGTGCAATTGAGAGTTTGAAAAATTATCCTCTACTAGCAACAGCCTCAAAGGTCCAGATGCAAAAGATGCAGGAAATGGAACAGCTGGCAAATGTACAAGGTCTGCCAACTGATCGAAACACACTCAATAAGCTAATGGCACTGAATCCTGGAATGAACAACCATATGAACAACACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCACCCCAAGCTGCTTTAGCACTGAACAACTACCCAAATCTTCTGATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCACTTCATCGAGAAGGGTCCTTGTTCAATAATTCAAACCTGAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTGCTTTAATTCCAGGCTCAATGCAGAACTCGCCTGTAGGCAGTTTCCCAAGTCCCCATCTACCCCCACAGCAGCAGCAGCAACAACAAGAAGTCCTTCAACAGCGCACATTAAGTGCAAATGGTTTACTTCAACAAAATCATTCACCGGGTTCCCAAGGAAATCAAACTCTACAGCAGCAGCAGATGATCCAGCAACTGCTGCAGGAGATGTCAAATAACAATGGGGGAATGCAACCACAGTCTCTTGGTGGACTCACTGCAAATGGGAATATTGCAAAGAATGCAATGGGTTTTGGGGGCCATACTCCATCCTTAAGTGGAGGTTCTGCCAATGTTCCTGGAAACAATGGACCTATGTCAAGGAATAATAGCTTCAAAACAGCTTCAAATAGTGATTCTTCTGCAGCAGGTGGCAACAATGGATTCAATCAGAGAACATCTGATATGCCACAAAATCTACATTTGCAAGATGTGGTTCAGGATATTGGTAATGAGTTCTCGGATAACCCCTTCTTTAACAGTGATCTTGATGACAACATGGGTTTCAGCTGGAAGGCATGA
>Glyma09g26960.1 sequence type=predicted peptide gene model=Glyma09g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTPSRVSGSLTRSSSHSGIFFQGDGQSQNIVNSHLSSSFVNSSSTVPGAGCSNLGPVSGDINNAVLNTVTNSAPSVGASSLVTDANSALSSGPHLQRSASVNTDSYLRLPASPMSFTLNNISISGSSSSHQDQNVQQLQQNQQQPQGASSATSLPASQTRPSLLQMGAQVPRSFIQDPNNMSHLSKKPRMDIKQEDIMQQQVIQQILQRQDSMQFQGRNPQLQAFLQQQQRLRQQQIFQSMPQLQRAHLQQQRQQLQQQVMQPSSAGKRPYDSGVSGVCARRLMQYLYHQRQRPNDNSIAYWIKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPRETRFPSGAMMLEYAKAVQESVYESLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLIQVAQKCQSTIAESGADWVSQQDLQTNSNMVLTAGRQLAKILEISQQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHKIGAIESLKNYPLLATASKVQMQKMQEMEQLANVQGLPTDRNTLNKLMALNPGMNNHMNNTHNMVNRGALSGSPQAALALNNYPNLLMRQNSMNSSPGSLHREGSLFNNSNLSPSSALQGAGPALIPGSMQNSPVGSFPSPHLPPQQQQQQQEVLQQRTLSANGLLQQNHSPGSQGNQTLQQQQMIQQLLQEMSNNNGGMQPQSLGGLTANGNIAKNAMGFGGHTPSLSGGSANVPGNNGPMSRNNSFKTASNSDSSAAGGNNGFNQRTSDMPQNLHLQDVVQDIGNEFSDNPFFNSDLDDNMGFSWKA* >Glyma09g26960.2 sequence type=predicted peptide gene model=Glyma09g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLRQQLQQQVMQPSSAGKRPYDSGVSGVCARRLMQYLYHQRQRPNDNSIAYWIKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPRETRFPSGAMMLEYAKAVQESVYESLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLIQVAQKCQSTIAESGADWVSQQDLQTNSNMVLTAGRQLAKILEISQQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHKIGAIESLKNYPLLATASKVQMQKMQEMEQLANVQGLPTDRNTLNKLMALNPGMNNHMNNTHNMVNRGALSGSPQAALALNNYPNLLMRQNSMNSSPGSLHREGSLFNNSNLSPSSALQGAGPALIPGSMQNSPVGSFPSPHLPPQQQQQQQEVLQQRTLSANGLLQQNHSPGSQGNQTLQQQQMIQQLLQEMSNNNGGMQPQSLGGLTANGNIAKNAMGFGGHTPSLSGGSANVPGNNGPMSRNNSFKTASNSDSSAAGGNNGFNQRTSDMPQNLHLQDVVQDIGNEFSDNPFFNSDLDDNMGFSWKA*
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