Glyma09g26550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g26550

Feature Type:	gene_model
Chromosome:	Gm09
Start:	33049107
stop:	33050904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g26550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27550	AT	Annotation by Michelle Graham. TAIR10: centroradialis \| chr2:11773417-11774509 FORWARD LENGTH=175	SoyBase	E_val: 2.00E-81	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding	SoyBase	N/A	ISS
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI		ISS
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI		ISS
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI		ISS
UniRef100_G7Z0B3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Terminal flowering 1-like protein 4 n=1 Tax=Glycine max RepID=G7Z0B3_SOYBN	SoyBase	E_val: 6.00E-122	ISS
UniRef100_I1L3B0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3B0_SOYBN	SoyBase	E_val: 3.00E-123	ISS

Expression Patterns of Glyma09g26550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g26550

Paralog	Evidence	Comments
Glyma16g32080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g26550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g143500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g26550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g26550

Limit To All Plant Sequences

>Glyma09g26550.2   sequence type=transcript   gene model=Glyma09g26550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATGATCATTCTCTCTAGCTAGCTAGCGTGTCCCCTTAACAATTTTGAAGAACCCAATTTGCTTTCTTAAAACGGAAATCCTTTCCCAAAATAGACAAACCTGTATGGAATCTCTCTTTATGCTTCTAATCCAAGCCAAGCTCATTATAACTCTATAAATGCCTTCAAAATCTCTCACTTCACATATACCCTCATACACAAAGTTTTAGAGCATATTTTCTTCATTTTTCTTGCATTCCTTCTCTTTGCAATTGATGTCTAGGCTAATGGAACAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTTGACATTTTCAGCCCAAGTGTAAGAATGAATGTTACATATTCCACTAAGCAAGTTGCTAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACAGACCCAGATGCTCCAAGTCCTAGTGATCCACATCTGAGGGAACATCTCCACTGGACGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGTAAAGAGATAGTGGGCTATGAGAGTCCAAAACCAGTAATAGGAATCCACAGGTATGTGTTCATTTTGTTCAAGCAGAGAGGAAGACAGACAGTCAGGCCTCCTTCTTCAAGAGACCATTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGTAGTTTACTTCAATGCTCAAAGAGAGACTGCCGCAAGAAGGAGGTGATTCCTGAAGAAGAAGAAGAAGAAGAAGAAAGGGTTTGGCATGGTTGAGTAAGGAAAGATAGGTGTGTTTGATGAAATCTCTTCCTCTCATCAATTTTTTCTTTTTCCAATTTCTTTTGGAGTCCACAAACAAGGGAAACTGTGAGGTAGGTGGTGTTCAAAAAGTAGTAGATATTCTTGATGTACTTTATACTTCTAGCTGTTATAGGTTATGGGAAGTTGGGGACCAAACTAGGTGTTGTTGTGATAGGAATGAACATAGCTTTTACCAAAGCTGTGTGTGGCTTTCTAGTAGGTGTGTCCGGAGTGTAATGATATGTTTGATGATATATAATTAATGAGAAGGAGGACATGTTATATGCAAACA

Coding sequences of Glyma09g26550

Limit To All Plant Sequences

>Glyma09g26550.1   sequence type=CDS   gene model=Glyma09g26550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGGCTAATGGAACAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTTGACATTTTCAGCCCAAGTGTAAGAATGAATGTTACATATTCCACTAAGCAAGTTGCTAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACAGACCCAGATGCTCCAAGTCCTAGTGATCCACATCTGAGGGAACATCTCCACTGGACGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGTAAAGAGATAGTGGGCTATGAGAGTCCAAAACCAGTAATAGGAATCCACAGGTATGTGTTCATTTTGTTCAAGCAGAGAGGAAGACAGACAGTCAGGCCTCCTTCTTCAAGAGACCATTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGTAGTTTACTTCAATGCTCAAAGAGAGACTGCCGCAAGAAGGAGGTGA

>Glyma09g26550.2   sequence type=CDS   gene model=Glyma09g26550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGGCTAATGGAACAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTTGACATTTTCAGCCCAAGTGTAAGAATGAATGTTACATATTCCACTAAGCAAGTTGCTAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACAGACCCAGATGCTCCAAGTCCTAGTGATCCACATCTGAGGGAACATCTCCACTGGACGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGTAAAGAGATAGTGGGCTATGAGAGTCCAAAACCAGTAATAGGAATCCACAGGTATGTGTTCATTTTGTTCAAGCAGAGAGGAAGACAGACAGTCAGGCCTCCTTCTTCAAGAGACCATTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGTAGTTTACTTCAATGCTCAAAGAGAGACTGCCGCAAGAAGGAGGTGA

Predicted protein sequences of Glyma09g26550

Limit To All Plant Sequences

>Glyma09g26550.1   sequence type=predicted peptide   gene model=Glyma09g26550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLMEQPLVVGRVIGEVVDIFSPSVRMNVTYSTKQVANGHELMPSTIMAKPRVEIGGDDMRTAYTLIMTDPDAPSPSDPHLREHLHWTVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPPSSRDHFNTRRFSEENGLGLPVAVVYFNAQRETAARRR*

>Glyma09g26550.2   sequence type=predicted peptide   gene model=Glyma09g26550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLMEQPLVVGRVIGEVVDIFSPSVRMNVTYSTKQVANGHELMPSTIMAKPRVEIGGDDMRTAYTLIMTDPDAPSPSDPHLREHLHWTVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPPSSRDHFNTRRFSEENGLGLPVAVVYFNAQRETAARRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain