SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27420 | AT | Annotation by Michelle Graham. TAIR10: carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368 | SoyBase | E_val: 2.00E-40 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043562 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22764 | Panther | RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). | JGI | ISS | |
| PTHR22764:SF21 | Panther | OS08G0484200 PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_I1L390 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L390_SOYBN | SoyBase | E_val: 1.00E-162 | ISS |
| UniRef100_Q84KA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING/c3HC4/PHD zinc finger-like protein n=2 Tax=Cucumis melo RepID=Q84KA9_CUCME | SoyBase | E_val: 7.00E-42 | ISS |
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Glyma09g26100 not represented in the dataset |
Glyma09g26100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g140800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g26100.1 sequence type=CDS gene model=Glyma09g26100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCATCATCATCATATTCATACGCTCAATCCCCTGCAGCACCAGCAGTGGCTCATGTCCCTTCCACCAGAGCAACGCTTCCCATGTTACTCGTGATCTTCCTCTTCGCCCTCCTCTTCACCGCATTCTGCTCCATCTTCATTCGCTACTGCTCCCACGAAGAACAACCCCACGCGCTTCCACAAGCCACGCGCGCCACGCCGCGCGGAGTCGACCCGCGCGTGCTCGCCACGTGTCCCGTCACGTCCTACTACGCAGTCAAAATGAAGACGCCGCAAAAGGCTGCGTTTCAGTGTGCGGTGTGTTTGGCGGAGTTCGACGACGCCGACGCGCTCCGCTTGCTACCCAAGTGCGGTCACGTGTTCCACGCGCACTGCATCGACGCGTGGCTCGCGGCGCACGTGACATGCCCCGTGTGCCGCGGCGAAGTGAGCGTGGAAATCGAGGGGGAGGCACGTGCGCGCCACGTGTTTGAAGAAAGTTCCGTGAGAGGCTTTGGGGTGCTTCTGAGGTCACATTCGACGGGTCACTCTTTGGAGAGGTTCACTCTGAGGATGCCCGAGGAAGTAATGAAGAAGATTCTGGAAGATAGTGAACGCGGGAATGTGACGAGGATGATGAAGCGTTCCGCGAGCTACGACGTCGTTTTGCGGAGCATGGAAGAAGGGGGTGAAGGTAGTAGTAATAGTGGTAGTAATAGTAAAGAGAAGAGTAGTACTAATAATAATAACCGGTGGGTTTTATCGATGACGCCTCCCTTTGTTTCTCGCGCCGTTCGGGGATTCCGAGAGTGTCAAGAGAGAACGGTTTTCCATTGTGAAGTTTGA
>Glyma09g26100.1 sequence type=predicted peptide gene model=Glyma09g26100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSSYSYAQSPAAPAVAHVPSTRATLPMLLVIFLFALLFTAFCSIFIRYCSHEEQPHALPQATRATPRGVDPRVLATCPVTSYYAVKMKTPQKAAFQCAVCLAEFDDADALRLLPKCGHVFHAHCIDAWLAAHVTCPVCRGEVSVEIEGEARARHVFEESSVRGFGVLLRSHSTGHSLERFTLRMPEEVMKKILEDSERGNVTRMMKRSASYDVVLRSMEEGGEGSSNSGSNSKEKSSTNNNNRWVLSMTPPFVSRAVRGFRECQERTVFHCEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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