SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g26070): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g26070): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g26070

Feature Type:gene_model
Chromosome:Gm09
Start:32330061
stop:32335077
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g26070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52220AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:21207097-21207678 REVERSE LENGTH=145 SoyBaseE_val: 1.00E-37ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG4487 KOG Uncharacterized conserved protein JGI ISS
PF09696PFAM Ctf8 JGI ISS
UniRef100_F4KEU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chromosome transmission fidelity protein 8 n=1 Tax=Arabidopsis thaliana RepID=F4KEU4_ARATH SoyBaseE_val: 5.00E-35ISS
UniRef100_I1L387UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L387_SOYBN SoyBaseE_val: 6.00E-95ISS

Expression Patterns of Glyma09g26070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g26070 not represented in the dataset
Glyma09g26070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g26070
ParalogEvidenceComments
Glyma16g31920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g26070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g140600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g26070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g26070
>Glyma09g26070.1   sequence type=CDS   gene model=Glyma09g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATTCGAGTTCGATGCAACTGTGGAGAAGGAAGCTGCGAGGAATGGGGGGTTATAGAACTTCAAGGAGTGGTGGAGCCACAGCCTGGATTCCACGATTCCCTCCAAAATCTTCACATCGGCACTTTGTGTCGTCCTTCTTCTCAGGAAGTCTACACCTTCACTGTTGGATACCATGAACTGACGGGGTCAAAGGTTCCCTTAAAGAAGCCAATGGTGGTGCTCAAGAAAGTAAAGCATCCTGATGGAGAAAGTGGTTGTAAGGTGGAGCTGCAAGTTGTTGGAGTCATTAGACATAAGATTCTGTTCAAGAACAGACCAAAGGCTCTCATTTCTAAGCCACAGATAACATCCAGGGAAAGACAAAAGCCTATCATGTTAGGGTCTTCTCCTTCAAATCAAACTGCTTAA
Predicted protein sequences of Glyma09g26070
>Glyma09g26070.1   sequence type=predicted peptide   gene model=Glyma09g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIRVRCNCGEGSCEEWGVIELQGVVEPQPGFHDSLQNLHIGTLCRPSSQEVYTFTVGYHELTGSKVPLKKPMVVLKKVKHPDGESGCKVELQVVGVIRHKILFKNRPKALISKPQITSRERQKPIMLGSSPSNQTA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo