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Report for Sequence Feature Glyma09g25350

Feature Type:gene_model
Chromosome:Gm09
Start:31506682
stop:31507602
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g25350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55240AT Annotation by Michelle Graham. TAIR10: ARABIDOPSIS THALIANA PEROXYGENASE 2 | chr5:22405963-22407158 FORWARD LENGTH=243 SoyBaseE_val: 2.00E-74ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004392GO-mf Annotation by Michelle Graham. GO Molecular Function: heme oxygenase (decyclizing) activity SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0071614GO-mf Annotation by Michelle Graham. GO Molecular Function: linoleic acid epoxygenase activity SoyBaseN/AISS
PF05042PFAM Caleosin related protein JGI ISS
UniRef100_I1L364UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L364_SOYBN SoyBaseE_val: 4.00E-115ISS
UniRef100_O23959UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ca+2-binding EF hand protein n=1 Tax=Glycine max RepID=O23959_SOYBN SoyBaseE_val: 3.00E-72ISS

Expression Patterns of Glyma09g25350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g25350 not represented in the dataset
Glyma09g25350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g25350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g137700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g25350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g25350
>Glyma09g25350.1   sequence type=CDS   gene model=Glyma09g25350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCTGACACAAAATGTGAATGGCATGTGGGGCCACAAACACAATGACATGTGCATTCTTCAACAACATGTATCCTTCTTCGACCTTGACAATAATGGTGTCGTCTACCTATTGGACACATATATGGGATTTCGTGCACTCAGTTTCAGTGTTATTCTTTCCTTCATTTTTTCAATTGGTATTCATGTAAATATCAGTTATCCTACTCTTCCTACATGGCTACCTTCACCTTTTTTCCCAATTTACATAAAAAACATACATAGGGCAAAGCATGGAAGTGACACTGGTACCTATGACACAGAGGGAAGGTTCATGCCAACAAATTTGGAATTCATGTTCAGCAAGTATGCACGTGAGGTGCCTGATAAATTGACTTTGAAGGAGCTGTGGCACATGACTGAAGGAAACATGGTTGCATATGACTTCTTTGGCTGTAAGTTTGAGTGGGGTGTTTTGTATGTCCTAGCAAGAGATGAACAAGGGTATCTATCAAAATAA
Predicted protein sequences of Glyma09g25350
>Glyma09g25350.1   sequence type=predicted peptide   gene model=Glyma09g25350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LLTQNVNGMWGHKHNDMCILQQHVSFFDLDNNGVVYLLDTYMGFRALSFSVILSFIFSIGIHVNISYPTLPTWLPSPFFPIYIKNIHRAKHGSDTGTYDTEGRFMPTNLEFMFSKYAREVPDKLTLKELWHMTEGNMVAYDFFGCKFEWGVLYVLARDEQGYLSK*






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