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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02260 | AT | Annotation by Michelle Graham. TAIR10: Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502 | SoyBase | E_val: 0 | ISS |
| GO:0015746 | GO-bp | Annotation by Michelle Graham. GO Biological Process: citrate transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: citrate transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2639 | KOG | Sodium sulfate symporter and related arsenite permeases | JGI | ISS | |
| PTHR10283 | Panther | CATION TRANSPORTER RELATED | JGI | ISS | |
| PTHR10283:SF40 | Panther | ARSENITE TRANSPORT PROTEIN | JGI | ISS | |
| PF03600 | PFAM | Citrate transporter | JGI | ISS | |
| UniRef100_Q1RU51 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Medicago truncatula RepID=Q1RU51_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023385FF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023385FF related cluster n=1 Tax=unknown RepID=UPI00023385FF | SoyBase | E_val: 0 | ISS |
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Glyma09g24943 not represented in the dataset |
Glyma09g24943 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g30000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g134900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g24943.2 sequence type=transcript gene model=Glyma09g24943 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAGGTCACCTTTCAGTATGCGGTATGAAGTTTTCTTGATAGGTTTTCAGCTCTAAGGATGTTGCAGTTCTCTCTTCTCTTATTTTCCATATAGATTAAAATATTTCTAAATCTCAATCCCTAAAAAGAATACAAAAAATTGATAGCTTTCATGGAATAAATCCAATCCAAGGACTGGAAAGTGTGAGTGAGATTCAAGTTATATCGAAGCCCATGAAAGAATTTTCTTTATAAGGAAATTCTACCAGGCAAATTAAATTTAACTGTGTTGGCCTAGAGGTGAAGTTATTAACATTTGTTTTGAAGCTTGGAAATTGTTGCTTGTTCAATCACAACAATGGCTTTAGCTCCTACTTCAAAAGTTGTCCTTGGTTCAATAGCCTTTGCAATCTTCTGGGTACTAGCGGTTTTCCCAGCTGTGCCTTTTCTACCCATTGGGAGAACTGCAGGGTCCCTGCTAGGTGCAATGCTTATGGTAATATTCAAAGTTCTTAGTCCAGACCAAGCTTATGCTGCAATTGATCTTCCAATTCTTGGTCTTCTTTTTGGGACTATGGCTGTCACTACTTTTCTTGAAAGAGCAAACATGTTCAAGTACTTGGGGAAATTGCTTTCTTGGAAAAGTAAAGGACCAAAGGACTTACTTTGTAGAATTTGCCTCATTTCTGCTATCTCAAGTGCTTTTTTCACCAATGACACATCTTGCATTGTGTTGACTGAATTTGTGTTGAAAATTGCAAGGCAACATAACCTCCCACCATACCCTTTCCTTCTTGCACTTGCTACAAGTGCTAATATTGGATCCTCAGCAACCCCAATTGGGAACCCCCAGAATTTGGTTATAGCTATTCAAGGTAAAATATCATTTGGGAGGTTTCTGATGGGTATTCTTCCAGCTATGCTTGTAGGAGTTGTGGTGAATGTTGTATTTCTTATAGCCATGTATTGGAAGGTGTTATCTTGTCCTAAGGATGAAGAGGATCCAATCTCAGAAATTGTAGTAGAAGAGGAGGTTGTTTCTCATCAGTTTTCTCCAGCCAGAATGTCTCATTTTACATCCTTTAATTCTCAAGAATGTAATGGCAGTGTAGACCAATCAACTCCAAGTGAAAGCGAAGTTCAGATGATTCATAGGAGCACAAAGGATTCCACAAAAAACTCAAATGCATCCAAGGAGGGGACAAATGACACAAAGGAGGAAATTAATAATCCTTCAAAAAATGTTGCAATAGTAGTAGATAAACCTATTGAAGCACATGTTATACTCTCTTCAGAAGAAAAGGACTACATGAACAACAAATGGAAGAGGGTACTGTGGAAATCTTGTGTTTATGCAATCACATTAGTGATGTTGATCGCAATGCTTATAGGTTTGAATATGGCATGGACAGCAATTGCAGCTGCAATAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGAGAAGGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGATGGATTTAAGTCAACTGGAATTCCAAGTGCTATGTGGGACTTAATGGAGCCCTATTCTCGAATAGATCATGCTAGTGGAACAGCTATACTTGCCGTGGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTGTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGCAGGGAACCTTTCACTATTAGGATCAGCTGCCAACTTGATAGTTTGTGAACAAGCTCGTCGAGCTCCAAACCTTGGATACACATTAACTTTTTGGACCCATCTAAAAATTGGCCTTCCTTCTACTCTTATAGTCACTGCTATTGGGTTGACACTAATAAAATGACAAGAGTTTACTTGAGTCCTAATTGAAGAATCTTATCGTAGATGTTTACACAAGCAAATTAAAGTCAGTTTTTATTGTAATGTATTTTAAGGTTGTTAGAAAATATAGTTAGATGAACAGGGAATTTTCTCTGTTTTTGTTGTTAATGTCATCAAATAAGTATATGATTGTGATTGTCCTAGCTAAAAGTTTGATTGGAATGCTTTGAAATTTCAACTTGTAATGAATTTTAGTTTGGGAGTTATGTGAAATCCTTGGCAATCCAATTTATTTTTTT
>Glyma09g24943.1 sequence type=CDS gene model=Glyma09g24943 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTAGCTCCTACTTCAAAAGTTGTCCTTGGTTCAATAGCCTTTGCAATCTTCTGGGTACTAGCGGTTTTCCCAGCTGTGCCTTTTCTACCCATTGGGAGAACTGCAGGGTCCCTGCTAGGTGCAATGCTTATGGTAATATTCAAAGTTCTTAGTCCAGACCAAGCTTATGCTGCAATTGATCTTCCAATTCTTGGTCTTCTTTTTGGGACTATGGCTGTCACTACTTTTCTTGAAAGAGCAAACATGTTCAAGTACTTGGGGAAATTGCTTTCTTGGAAAAGTAAAGGACCAAAGGACTTACTTTGTAGAATTTGCCTCATTTCTGCTATCTCAAGTGCTTTTTTCACCAATGACACATCTTGCATTGTGTTGACTGAATTTGTGTTGAAAATTGCAAGGCAACATAACCTCCCACCATACCCTTTCCTTCTTGCACTTGCTACAAGTGCTAATATTGGATCCTCAGCAACCCCAATTGGGAACCCCCAGAATTTGGTTATAGCTATTCAAGGTAAAATATCATTTGGGAGGTTTCTGATGGGTATTCTTCCAGCTATGCTTGTAGGAGTTGTGGTGAATGTTGTATTTCTTATAGCCATGTATTGGAAGGTGTTATCTTGTCCTAAGGATGAAGAGGATCCAATCTCAGAAATTGTAGTAGAAGAGGAGGTTGTTTCTCATCAGTTTTCTCCAGCCAGAATGTCTCATTTTACATCCTTTAATTCTCAAGAATGTAATGGCAGTGTAGACCAATCAACTCCAAGTGAAAGCGAAGTTCAGATGATTCATAGGAGCACAAAGGATTCCACAAAAAACTCAAATGCATCCAAGGAGGGGACAAATGACACAAAGGAGGAAATTAATAATCCTTCAAAAAATGTTGCAATAGTAGTAGATAAACCTATTGAAGCACATGTTATACTCTCTTCAGAAGAAAAGGACTACATGAACAACAAATGGAAGAGGGTACTGTGGAAATCTTGTGTTTATGCAATCACATTAGTGATGTTGATCGCAATGCTTATAGGTTTGAATATGGCATGGACAGCAATTGCAGCTGCAATAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGAGAAGGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGATGGATTTAAGTCAACTGGAATTCCAAGTGCTATGTGGGACTTAATGGAGCCCTATTCTCGAATAGATCATGCTAGTGGAACAGCTATACTTGCCGTGGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTGTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGCAGGGAACCTTTCACTATTAGGATCAGCTGCCAACTTGATAGTTTGTGAACAAGCTCGTCGAGCTCCAAACCTTGGATACACATTAACTTTTTGGACCCATCTAAAAATTGGCCTTCCTTCTACTCTTATAGTCACTGCTATTGGGTTGACACTAATAAAATGA >Glyma09g24943.2 sequence type=CDS gene model=Glyma09g24943 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTAGCTCCTACTTCAAAAGTTGTCCTTGGTTCAATAGCCTTTGCAATCTTCTGGGTACTAGCGGTTTTCCCAGCTGTGCCTTTTCTACCCATTGGGAGAACTGCAGGGTCCCTGCTAGGTGCAATGCTTATGGTAATATTCAAAGTTCTTAGTCCAGACCAAGCTTATGCTGCAATTGATCTTCCAATTCTTGGTCTTCTTTTTGGGACTATGGCTGTCACTACTTTTCTTGAAAGAGCAAACATGTTCAAGTACTTGGGGAAATTGCTTTCTTGGAAAAGTAAAGGACCAAAGGACTTACTTTGTAGAATTTGCCTCATTTCTGCTATCTCAAGTGCTTTTTTCACCAATGACACATCTTGCATTGTGTTGACTGAATTTGTGTTGAAAATTGCAAGGCAACATAACCTCCCACCATACCCTTTCCTTCTTGCACTTGCTACAAGTGCTAATATTGGATCCTCAGCAACCCCAATTGGGAACCCCCAGAATTTGGTTATAGCTATTCAAGGTAAAATATCATTTGGGAGGTTTCTGATGGGTATTCTTCCAGCTATGCTTGTAGGAGTTGTGGTGAATGTTGTATTTCTTATAGCCATGTATTGGAAGGTGTTATCTTGTCCTAAGGATGAAGAGGATCCAATCTCAGAAATTGTAGTAGAAGAGGAGGTTGTTTCTCATCAGTTTTCTCCAGCCAGAATGTCTCATTTTACATCCTTTAATTCTCAAGAATGTAATGGCAGTGTAGACCAATCAACTCCAAGTGAAAGCGAAGTTCAGATGATTCATAGGAGCACAAAGGATTCCACAAAAAACTCAAATGCATCCAAGGAGGGGACAAATGACACAAAGGAGGAAATTAATAATCCTTCAAAAAATGTTGCAATAGTAGTAGATAAACCTATTGAAGCACATGTTATACTCTCTTCAGAAGAAAAGGACTACATGAACAACAAATGGAAGAGGGTACTGTGGAAATCTTGTGTTTATGCAATCACATTAGTGATGTTGATCGCAATGCTTATAGGTTTGAATATGGCATGGACAGCAATTGCAGCTGCAATAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGAGAAGGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGATGGATTTAAGTCAACTGGAATTCCAAGTGCTATGTGGGACTTAATGGAGCCCTATTCTCGAATAGATCATGCTAGTGGAACAGCTATACTTGCCGTGGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTGTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGCAGGGAACCTTTCACTATTAGGATCAGCTGCCAACTTGATAGTTTGTGAACAAGCTCGTCGAGCTCCAAACCTTGGATACACATTAACTTTTTGGACCCATCTAAAAATTGGCCTTCCTTCTACTCTTATAGTCACTGCTATTGGGTTGACACTAATAAAATGA
>Glyma09g24943.1 sequence type=predicted peptide gene model=Glyma09g24943 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALAPTSKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFKVLSPDQAYAAIDLPILGLLFGTMAVTTFLERANMFKYLGKLLSWKSKGPKDLLCRICLISAISSAFFTNDTSCIVLTEFVLKIARQHNLPPYPFLLALATSANIGSSATPIGNPQNLVIAIQGKISFGRFLMGILPAMLVGVVVNVVFLIAMYWKVLSCPKDEEDPISEIVVEEEVVSHQFSPARMSHFTSFNSQECNGSVDQSTPSESEVQMIHRSTKDSTKNSNASKEGTNDTKEEINNPSKNVAIVVDKPIEAHVILSSEEKDYMNNKWKRVLWKSCVYAITLVMLIAMLIGLNMAWTAIAAAITLVVLDFKDAGPSLEKVSYALLVFFCGMFITVDGFKSTGIPSAMWDLMEPYSRIDHASGTAILAVVILVLSNLASNVPTVLLLGARVAASAAAISKGDEEKAWLILAWVSTIAGNLSLLGSAANLIVCEQARRAPNLGYTLTFWTHLKIGLPSTLIVTAIGLTLIK* >Glyma09g24943.2 sequence type=predicted peptide gene model=Glyma09g24943 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALAPTSKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFKVLSPDQAYAAIDLPILGLLFGTMAVTTFLERANMFKYLGKLLSWKSKGPKDLLCRICLISAISSAFFTNDTSCIVLTEFVLKIARQHNLPPYPFLLALATSANIGSSATPIGNPQNLVIAIQGKISFGRFLMGILPAMLVGVVVNVVFLIAMYWKVLSCPKDEEDPISEIVVEEEVVSHQFSPARMSHFTSFNSQECNGSVDQSTPSESEVQMIHRSTKDSTKNSNASKEGTNDTKEEINNPSKNVAIVVDKPIEAHVILSSEEKDYMNNKWKRVLWKSCVYAITLVMLIAMLIGLNMAWTAIAAAITLVVLDFKDAGPSLEKVSYALLVFFCGMFITVDGFKSTGIPSAMWDLMEPYSRIDHASGTAILAVVILVLSNLASNVPTVLLLGARVAASAAAISKGDEEKAWLILAWVSTIAGNLSLLGSAANLIVCEQARRAPNLGYTLTFWTHLKIGLPSTLIVTAIGLTLIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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