Glyma09g24630 - SoyBase

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Report for Sequence Feature Glyma09g24630

Feature Type:	gene_model
Chromosome:	Gm09
Start:	30419469
stop:	30426256
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g24630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25680	AT	Annotation by Michelle Graham. TAIR10: PPPDE putative thiol peptidase family protein \| chr4:13088425-13089952 FORWARD LENGTH=252	SoyBase	E_val: 7.00E-128	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0324	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12378	Panther	UNCHARACTERIZED	JGI		ISS
PF05903	PFAM	PPPDE putative peptidase domain	JGI		ISS
UniRef100_G7JDQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PPPDE peptidase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JDQ0_MEDTR	SoyBase	E_val: 2.00E-156	ISS
UniRef100_I1L327	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L327_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g24630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g24630 not represented in the dataset	Glyma09g24630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g24630

Paralog	Evidence	Comments
Glyma16g29860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g24630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g132800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g24630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g24630

Limit To All Plant Sequences

>Glyma09g24630.2   sequence type=transcript   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTGATAATCCTTTTTTTCTTTTCTTTTCCGTTCTTTTCAATTCTTCTTTTATCAGCTTTGGTCTGTTACATACTCTTTCTCTCTCTCTGTTATGTTCCCTCCTTCTAGAATATAAATTCACGAGAGAAACACGAAAATCTTTCGATTCCGGACAGAAAAAAACTTGGGACGGTGAAATTGGAGGGTTTTCCGGGATCCCAAGGCCGAATCTTGATTCAATTTACGAAAAGAGAACACCATCCGTTGCTGAATCTTGAAGCCGAATCAAATCGTAGAGAGAGAGAGAGACACCCAGATAGGCGAATAGCGTTTAGAGAGAGAAAGGTGAAGTGGGGTTGTCTAAAGTTTGGGTCTTGTGTTTGTTGTGTGTGGTGGGTGAAAGGGAAAGATGACGGATGTGGTACTGCATATATACGATGTGACGAATAGTGGATCCGAGAAAACCAACAGCACCATTGTTCAGATCAACAAGATCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGGTCCTGTGGAGTGTGTGGTTGTAACTGGCTCGCTGCTGTGGTGTGAAAAGTGATCATACTGAAATGAAGAGAGAAATTTGAGATATGGACACTGGCTAGTAGAGGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAATCCATTGTTCTAGGGAAAACAAACTTTTCTATTTTCAAGTTAAATCAAATACTGAGAGAACTCAGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTCCTGAGACCCCTAACAATTCAAACAGAGGAGGGTCCCCTAGGCTTCAAGGTTCTTGGTTGAAAAATATTATTACTAATGGTGCAAAACCGTCTACTAGTTCAGAAGCCGAGAATCAGAACGGAGTTATGCCCCTACCGCCAACACGAGAAGATGATCAAGCATTGCTACATAGCTCATCTTAGTTATGCAATGTATTGTAATTTTAAGTCAGAAAAAGTATAACGGAATTTTACATGCTATTCATGTGTATCAAATGTAAAATTTTTCGTTTGTTCAACTCAAATCTTATTGGTGCCTCGTAAGACTATGTTCTTTGAAAGGTACTTTTACTGTTTTTCTCTTTTTCCTATCTGACTTGGCAAACTATATTCACGCAGTCACAATTCCAAATTTTGATGAGTTTGAATTTATAAAGTGGATTTGATGTATTTTGATTTTAGTTAAAATATATATTTTTTATCCTCGTAAATATA

>Glyma09g24630.3   sequence type=transcript   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATATGACTCTTCTCATTGTTGATCTGATTATATGTTAATTTGGCATTCCCAGTCTCAGATAGCAAAAGGAACCTATCTTTTGTTTTTACTGGCTTCTACATAGTAAATATGGTGATGAAGTCTGTTTGTTTATTTATTTTTTCTCAAGGGAGGGTATCAATATTTGCATCTTCGTTGATATTGTGGTTCTGCTTAAACAGAAACTGTCACCTTCATGATATTACTTTTTTGTTGTTTATCTGGTCATATAGTATGCTTGCATCTTTTAGGTCATTTTTTTTTTTCATTTACTCACTTCTGCTTCCTTGACATATGGTAGGCCTGCTGTTTTATCTTGTGCTGACATATTTAAGATTGTTTTGCCATTACAGGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAATCCATTGTTCTAGGGAAAACAAACTTTTCTATTTTCAAGTTAAATCAAATACTGAGAGAACTCAGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTCCTGAGACCCCTAACAATTCAAACAGAGGAGGGTCCCCTAGGCTTCAAGGTTCTTGGTTGAAAAATATTATTACTAATGGTGCAAAACCGTCTACTAGTTCAGAAGCCGAGAATCAGAACGGAGTTATGCCCCTACCGCCAACACGAGAAGATGATCAAGCATTGCTACATAGCTCATCTTAGTTATGCAATGTATTGTAATTTTAAGTCAGAAAAAGTATAACGGAATTTTACATGCTATTCATGTGTATCAAATGTAAAATTTTTCGTTTGTTCAACTCAAATCTTATTGGTGCCTCGTAAGACTATGTTCTTTGAAAGGTACTTTTACTGTTTTTCTCTTTTTCCTATCTGACTTGGCAAACTATATTCACGCAGTCACAATTCCAAATTTTGATGAGTTTGAATTTATAAAGTGGATTTGATGTATTTTGATTTTAGTTAAAATATATATTTTTTATCCTCGTAAATATA

Coding sequences of Glyma09g24630

Limit To All Plant Sequences

>Glyma09g24630.1   sequence type=CDS   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGATGTGGTACTGCATATATACGATGTGACGAATAGTGGATCCGAGAAAACCAACAGCACCATTGTTCAGATCAACAAGATCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAATCCATTGTTCTAGGGAAAACAAACTTTTCTATTTTCAAGTTAAATCAAATACTGAGAGAACTCAGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTCCTGAGACCCCTAACAATTCAAACAGAGGAGGGTCCCCTAGGCTTCAAGGTTCTTGGTTGAAAAATATTATTACTAATGGTGCAAAACCGTCTACTAGTTCAGAAGCCGAGAATCAGAACGGAGTTATGCCCCTACCGCCAACACGAGAAGATGATCAAGCATTGCTACATAGCTCATCTTAG

>Glyma09g24630.2   sequence type=CDS   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACATATCGTGAATCCATTGTTCTAGGGAAAACAAACTTTTCTATTTTCAAGTTAAATCAAATACTGAGAGAACTCAGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTCCTGAGACCCCTAACAATTCAAACAGAGGAGGGTCCCCTAGGCTTCAAGGTTCTTGGTTGAAAAATATTATTACTAATGGTGCAAAACCGTCTACTAGTTCAGAAGCCGAGAATCAGAACGGAGTTATGCCCCTACCGCCAACACGAGAAGATGATCAAGCATTGCTACATAGCTCATCTTAG

>Glyma09g24630.3   sequence type=CDS   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACATATCGTGAATCCATTGTTCTAGGGAAAACAAACTTTTCTATTTTCAAGTTAAATCAAATACTGAGAGAACTCAGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTCCTGAGACCCCTAACAATTCAAACAGAGGAGGGTCCCCTAGGCTTCAAGGTTCTTGGTTGAAAAATATTATTACTAATGGTGCAAAACCGTCTACTAGTTCAGAAGCCGAGAATCAGAACGGAGTTATGCCCCTACCGCCAACACGAGAAGATGATCAAGCATTGCTACATAGCTCATCTTAG

Predicted protein sequences of Glyma09g24630

Limit To All Plant Sequences

>Glyma09g24630.1   sequence type=predicted peptide   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDVVLHIYDVTNSGSEKTNSTIVQINKIFKDGIGLGGIFHSAVQVFGDDEWSFGFCEQGTGVFSCPSGKNPMYTYRESIVLGKTNFSIFKLNQILRELSREWPGSSYDLLSKNCNHFCDEFCERLGVPKLPGWVNRFANAGDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLLGVTNNVTNNVKNGPETPNNSNRGGSPRLQGSWLKNIITNGAKPSTSSEAENQNGVMPLPPTREDDQALLHSSS*

>Glyma09g24630.2   sequence type=predicted peptide   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTYRESIVLGKTNFSIFKLNQILRELSREWPGSSYDLLSKNCNHFCDEFCERLGVPKLPGWVNRFANAGDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLLGVTNNVTNNVKNGPETPNNSNRGGSPRLQGSWLKNIITNGAKPSTSSEAENQNGVMPLPPTREDDQALLHSSS*

>Glyma09g24630.3   sequence type=predicted peptide   gene model=Glyma09g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTYRESIVLGKTNFSIFKLNQILRELSREWPGSSYDLLSKNCNHFCDEFCERLGVPKLPGWVNRFANAGDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLLGVTNNVTNNVKNGPETPNNSNRGGSPRLQGSWLKNIITNGAKPSTSSEAENQNGVMPLPPTREDDQALLHSSS*

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