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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24020 | AT | Annotation by Michelle Graham. TAIR10: septum site-determining protein (MIND) | chr5:8116731-8117711 FORWARD LENGTH=326 | SoyBase | E_val: 2.00E-178 | ISS |
| GO:0000918 | GO-bp | Annotation by Michelle Graham. GO Biological Process: barrier septum site selection | SoyBase | N/A | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0030899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-dependent ATPase activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| KOG3022 | KOG | Predicted ATPase, nucleotide-binding | JGI | ISS | |
| PTHR13696 | Panther | CELL DIVISION INHIBITOR MIND-1 | JGI | ISS | |
| PTHR13696:SF1 | Panther | SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND) | JGI | ISS | |
| PF01656 | PFAM | CobQ/CobB/MinD/ParA nucleotide binding domain | JGI | ISS | |
| UniRef100_I1L322 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Site-determining protein (Fragment) n=2 Tax=Glycine max RepID=I1L322_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MPI5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MPI5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g24580 not represented in the dataset |
Glyma09g24580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g29810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g132300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g24580.2 sequence type=CDS gene model=Glyma09g24580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTACAAATGTAAAAGAAGAAGAAAAAAAAAAACAAAAAAAGAAAGAGCTAACGCAACCCAAACCCAAAGTATCAATCTCCTCTACTTCCATTTCCAGTGGTCACTCACTCAGCCACTGTGCTTCTTCTTCTTCTCTTTCTCCCTCTCTCCTCTTCCCAATGCCCTCTCTCCACCTTCTCCCCGGCGCCACCACCGCCCCCAACTCCACATTCCTCCTCCGCCCCCATTCCCCTCTCCTCCCCTCCAAAACCCTAACCCCCAAAAAACCCAAACCCAAACCCCCCAGTGCCCTCCTCCAGTGGAACCGCAAGCCCGAGCTCTCCGGCTCCATCCCGCGCGTCACCGTCATTACCTCCGGAAAGGGCGGCGTGGGCAAGACCACCACCACCGCCAACATCGGCCTCTCCCTCGCCCGCCTGGGCTTCTCCGTGGTCGCCATCGACGCCGACGTCGGCCTCCGCAACCTCGACCTCCTCCTCGGCCTCGAGAACCGCGTCAACTACACCGTCATCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAAGCCCTCGTCCGCGACAAGCGCTGGTCCAACTTCGAACTCCTCTGCATCTCCAAACCCCGCTCCAAGCTCCCCCTCGGCTTCGGCGGTAAAGCCCTCACCTGGCTCGTGGACGCGCTGAAAGCGCGTCCACAGGGCTCCCCTGACTTCATCCTCATCGATTGCCCCGCCGGCATCGACGCCGGCTTCATCACCGCCATCACTCCCGCCAACGAGGCCGTCCTCATCACCACCCCCGACATCACCAGCCTCCGCGACGCCGACCGCGTCACCGGCCTCCTCGAATGCGACGGAATCCGGGACATCAAGATGATCGTCAACCGGGTTCGAACCGATATGATAAAAGGAGAAGACATGCTGTCGGTGTTGGACGTGCAAGAAATGTTAGGGTTGCCCTTGCTTGGGGCTATTCCTGAGGACACTGAGGTTATTAGAAGCACCAATAGAGGCTACCCTCTTGTGCTCAACAAGCCTCCCACTCTGGCTGGCTTGGCGTTCGAACAAGCCGCTTGGAGGCTCGTGGAGCAGGATAGCATGCAGGCCGTGGTGGTGGAAGAACAACCCAAACGAGGGTTTTTCTCCTTTTTTGGTGGGTAG
>Glyma09g24580.2 sequence type=predicted peptide gene model=Glyma09g24580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTNVKEEEKKKQKKKELTQPKPKVSISSTSISSGHSLSHCASSSSLSPSLLFPMPSLHLLPGATTAPNSTFLLRPHSPLLPSKTLTPKKPKPKPPSALLQWNRKPELSGSIPRVTVITSGKGGVGKTTTTANIGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVIEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWLVDALKARPQGSPDFILIDCPAGIDAGFITAITPANEAVLITTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMLSVLDVQEMLGLPLLGAIPEDTEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMQAVVVEEQPKRGFFSFFGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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