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Report for Sequence Feature Glyma09g24431

Feature Type:gene_model
Chromosome:Gm09
Start:30152531
stop:30158347
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g24431
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02210AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). | chr4:974320-975917 REVERSE LENGTH=439 SoyBaseE_val: 8.00E-16ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1N1Q7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1Q7_SOYBN SoyBaseE_val: 4.00E-163ISS

Expression Patterns of Glyma09g24431
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g24431 not represented in the dataset
Glyma09g24431 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g24431 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g131700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g24431
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g24431
>Glyma09g24431.1   sequence type=CDS   gene model=Glyma09g24431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGTGTGCTAGCTGATGTGCTTAGAGATCAAAGAAATTTGGGCAATAAAGGTGATGGAAATTGGAAAGCAGTAGCATACAGTACTGCAACTCAAATTTTGTCCAAGCGTTTTGGAGTTCACCTCATGGCAGATAATGTTAAGAACCGTTTTAAGCTTTGGAGAACATGGTATGGAATTGTGAGTGACATTCTTAGTCAAAGTAAATTTGACTGGGATAGCACAAAGTACATGATTACCGTTGAAAATGAAATTGCATGGAATGAACATGTAAAGTCACATGAAGAGGTCAAACGATTTCGATTTAAAGTCATTCCTAATTGGGATGATATTGTTGACCTATGTGCAAAGGATAGAGCTACTGGACTCGGAGCAGAAAATGCATTAGATGCAGATGATATCATGAGCAAAGAAACAAATGAAGAGGAAGCAATTCATAGTGTGATTTTTTACTTAGAGGGATCAAGTTCCGTCACAAGAAAAAACATTCACCCAAGTAAGAGTGGAGAGAAAGAAGGGATGATTTCCTCAATGAAAGAAGTAGCTGAGTCATTGAAAGAATTTGTTGAAGTGACTAAGAAGAAGATGGAGAACAAAAAAAAGATGGAGATAAAAGAAGCTCAAGAAGTGGTACATGAAGTGGTGAGTGAGCTAGATAATATACCTAATTCTAATGGTGCACTTCCACATAGAACAATCGATTGGTTGACAGAAAATCTCATTAAGTTTGCGATTATAAAAGCTCTTCCATTGGATGAGAAGGAGGATTACATCTCATCTTTTATGCCTTGA
Predicted protein sequences of Glyma09g24431
>Glyma09g24431.1   sequence type=predicted peptide   gene model=Glyma09g24431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERVLADVLRDQRNLGNKGDGNWKAVAYSTATQILSKRFGVHLMADNVKNRFKLWRTWYGIVSDILSQSKFDWDSTKYMITVENEIAWNEHVKSHEEVKRFRFKVIPNWDDIVDLCAKDRATGLGAENALDADDIMSKETNEEEAIHSVIFYLEGSSSVTRKNIHPSKSGEKEGMISSMKEVAESLKEFVEVTKKKMENKKKMEIKEAQEVVHEVVSELDNIPNSNGALPHRTIDWLTENLIKFAIIKALPLDEKEDYISSFMP*






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