Glyma09g24410 - SoyBase

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Report for Sequence Feature Glyma09g24410

Feature Type:	gene_model
Chromosome:	Gm09
Start:	30139624
stop:	30143224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g24410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52640	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 90.1 \| chr5:21352542-21355147 FORWARD LENGTH=705	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0019	KOG	Molecular chaperone (HSP90 family)	JGI		ISS
PTHR11528	Panther	HEAT SHOCK PROTEIN 90	JGI		ISS
PF00183	PFAM	Hsp90 protein	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
UniRef100_I1L314	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L314_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q71EE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Hevea brasiliensis RepID=Q71EE1_HEVBR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g24410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g24410

Paralog	Evidence	Comments
Glyma16g29750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g24410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g131500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g24410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g24410

Limit To All Plant Sequences

>Glyma09g24410.1   sequence type=CDS   gene model=Glyma09g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGACGCTGAAACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTAAGTCTCATCATCAACACATTCTACAGCAACAAGGAGATTTTCTTGCGTGAACTCATCAGCAATGCTTCTGATGCTTTGGATAAGATTCGATTCGAGAGCTTAACCGACAAGAGCAAGCTCGATGCTCAGCCAGAGCTCTTCATTCGTCTTGTGCCTGACAAGGATAACAAGACTCTTTCCATTATTGACAGCGGCATTGGAATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCGAGGTCCGGGACCAAGGAGTTCATGGAGGCGTTGCAGGCCGGTGCTGATGTCAGCATGATAGGGCAGTTCGGTGTGGGGTTCTACTCTGCTTACCTTGTTGCAGAGAAGGTCATTGTTACCACCAAGCACAATGATGATGAACAGTACATTTGGGAGTCTCAGGCTGGTGGCTCTTTCACTGTTACTAGGGACACTGATGGCGAGCAACTCGGAAGGGGAACCAAGATCACCCTCTTCCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGGAGAATCAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGTTATCCTATTTACCTTTGGACTGAGAAGACAACCGAGAAAGAGATCAGCGATGATGAAGATGATGAACCCAAGAAGGAGGAAGAAGGAGACATTGAGGATGTTGACGAGGAGAAGGAGAAGGATTCCAAGAAAAAGAAGAAGATCAAGGAGGTGTCTCATGAGTGGCAACTCATCAACAAGCAGAAACCAATTTGGCTGCGAAAGCCAGAAGAGATCACCAAGGATGAATACGCTTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAGCACTTGGCTGTGAAGCATTTCTCTGTGGAGGGCCAGCTTGAGTTCAAGGCCATCCTCTTTGTCCCGAAGAGGGCACCCTTTGATTTGTTTGACACCAGGAAGAAGATGAACAACATCAAGCTTTATGTCAGGAGGGTGTTTATAATGGACAATTGTGAGGAGCTCATTCCTGAGTACCTTGGATTTGTGAAAGGTGTTGTTGACTCCGATGACTTGCCGCTCAACATCTCTCGTGAGATGCTGCAACAAAACAAGATCCTGAAGGTGATCAGGAAGAATCTCGTGAAGAAGTGCATTGAGATGTTCAATGAAATTGCGGAGAACAAGGAAGATTACAACAAGTTCTATGATGCTTTTTCGAAGAATTTGAAGTTGGGTATCCACGAGGATAGTCAGAACAGGTCCAAGTTGGCTGATTTGCTCAGATACCACTCGACAAAGAGCGGAGATGAAATGACAAGCTTGAAGGACTACGTTACACGGATGAAGGAGGGTCAGAAGGACATTTACTACATCACAGGAGAGAGCAAGAAGGCAGTGGAGAACTCTCCCTTCTTGGAGAGACTCAAGAAGAAGGGCTATGAAGTTCTTTTCATGGTGGATGCAATTGATGAGTATGCTGTTGGACAACTCAAGGAGTACGATGGCAAGAAATTGGTTTCAGCTACAAAGGAAGGGTTGAAGCTAGATGATGAGACTGAGGAAGAGAAAAAGAAGAAAGAGGAGAAGAAGAAGTCATTTGATGAACTCTGCAAGGTCATCAAGGACATTCTGGGAGACAAAGTGGAGAAGGTTGTTGTCTCTGACAGAATTGTTGATTCCCCTTGCTGTTTGGTGACTGGTGAATATGGATGGAGTGCAAACATGGAGAGGATCATGAAGGCACAGGCTCTGAGAGACAGCAGCATGAGTGGCTACATGTCTAGCAAGAAGACGATGGAGATCAACCCTGACAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGATAAGAATGACAAGTCTGTTAAGGACCTTGTGTTGCTTCTCTTTGAGACTGCCCTTTTGACTTCAGGTTTCAGCCTTGATGATCCCAACACATTTGCTTCGAGGATACACAGGATGTTGAAGCTGGGACTTAGCATCGATGAGGATGACAATGGCGGAGATGATGTTGATATGCCCCCGTTGGAAGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAAGTGGACTAA

Predicted protein sequences of Glyma09g24410

Limit To All Plant Sequences

>Glyma09g24410.1   sequence type=predicted peptide   gene model=Glyma09g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKDNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEDVDEEKEKDSKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRSKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFDELCKVIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFASRIHRMLKLGLSIDEDDNGGDDVDMPPLEEDGAEESKMEEVD*

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