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Report for Sequence Feature Glyma09g24330

Feature Type:gene_model
Chromosome:Gm09
Start:30078181
stop:30078522
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g24330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23400AT Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr1:8312199-8314740 REVERSE LENGTH=564 SoyBaseE_val: 7.00E-21ISS
GO:0000373GO-bp Annotation by Michelle Graham. GO Biological Process: Group II intron splicing SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
UniRef100_E5GBI3UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA splicing factor n=1 Tax=Cucumis melo subsp. melo RepID=E5GBI3_CUCME SoyBaseE_val: 4.00E-21ISS
UniRef100_I1KXD4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXD4_SOYBN SoyBaseE_val: 5.00E-31ISS

Expression Patterns of Glyma09g24330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g24330 not represented in the dataset
Glyma09g24330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g24330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma09g24330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g24330
>Glyma09g24330.1   sequence type=CDS   gene model=Glyma09g24330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTTATCCCCGTGGAACATCAACCAAATACCCCCCTCCCCACAAAAAACCCGAACCACAGGCCAGTTCCAAGTACCACAGCCGCCAAAAACCCTCAAACACCACCGCCGCTCCAAGTACCACCGGCTAGTTCCCCGAGATGGTGGCATCGTAATTGGGGATTCCGGCGTGTTGTACCTACTCCCCACCGCGCCGTTCGAGTTTCAGTTCGACTATTCCAAGACGTCGAAGGTGAAGCCGATTGCCATCCACGAGCTGTCATTCCCGCCCTTCGTGCCGCCTACAATGTCACGGTCATGGACCGAGAAGGCACCACTAAAGGGCAAGAAGAGCAAGAAG
Predicted protein sequences of Glyma09g24330
>Glyma09g24330.1   sequence type=predicted peptide   gene model=Glyma09g24330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLSPWNINQIPPSPQKTRTTGQFQVPQPPKTLKHHRRSKYHRLVPRDGGIVIGDSGVLYLLPTAPFEFQFDYSKTSKVKPIAIHELSFPPFVPPTMSRSWTEKAPLKGKKSKK






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