SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52790 | AT | Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) | chr5:21391740-21394327 REVERSE LENGTH=500 | SoyBase | E_val: 8.00E-146 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2118 | KOG | Predicted membrane protein, contains two CBS domains | JGI | ISS | |
| PTHR12064 | Panther | ANCIENT CONSERVED DOMAIN PROTEIN-RELATED | JGI | ISS | |
| PTHR12064:SF2 | Panther | CYCLIN-RELATED | JGI | ISS | |
| PF01595 | PFAM | Domain of unknown function DUF21 | JGI | ISS | |
| UniRef100_G7KLG0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metal transporter CNNM2 n=1 Tax=Medicago truncatula RepID=G7KLG0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233843C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233843C related cluster n=1 Tax=unknown RepID=UPI000233843C | SoyBase | E_val: 0 | ISS |
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Glyma09g24130 not represented in the dataset |
Glyma09g24130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g29611 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g129700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g24130.3 sequence type=transcript gene model=Glyma09g24130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGGATTTTGCTTATATTCTGTTTTGTTACATGCCATGTTGCAATTCTTGTCATTGATTTTTTCTTTTGCTTCTCCCACTTTCCCCCATCCAAAGAAAAAATGAGTTCATATTTTGAGGAAAGAGCACCTTGTTGTGGAACTCACTTTTGGATTTTACTAAGCATGTGTTCGGCATTTGTGTTATTTGCTGCTATCACATCAGGTCTTTCTCTAGGACTCTTGTCCTTCAGCCAAGTTGATCTTGAGGTTCTTGTTAAAGCTGGGCAGCCTAAAATCCAGAAGAATGCAGCGAAAATTATGTCCATTGTCAAGAATGAGCATTTACTTTTATGCACCCTCCTCATAGCTAAATCAATGGCACTGGAGGGGGTTTCTGTTTTTTTGGAGAAAATGTTCCCAGAGTGGCTTTCTGTATTAATAGCAGCTACCATTTTGGGTTTGACCGCAGAGATTATCCCACAAGCCTTGTGTTCTCAATATGGTTTAAGTGTTGGGGCAGCAATGTCTCCCTTTGTTCGAGTTCTTATGATGGTTTTCTTCCCAATTGCATATCCACTTAGTAAGTTGTTGGATTGGCTTTTTGGCAAGGGGCATACTGCACTTCTAGGACGAGCAGAGCTGAAGACTTTAGTCCATTTACATGCTATTGAGGCAGGGAAAGGTGGAGAGTTGTCACTTCATGAAACTAGAATAATTGCTGGAGCTTTGGACTTGACACAGAAGACTGCTAAAGATGCTATGACTCCTATAAGTGAAACATTTTCTCTTGACATAAACTCCAAACTTGACATGCATACAATGGGCTTAATAATGAGCATAGGTCACAGCCGAATACCAGTCTACTCTGGAAAACAAACAAACATTGTTGGCATTATCTTGGTCAAGAATCTAATCTTCTGTCATCATGAAGATGAAATGCCAATTAAGTTTATGACTATCAGGAGAGTTCCTAGGGTTGGTGAAGATTGGCCACTATATGATATCCTGAATCAATTCAAGAAGGGTCAAAGCCACATGGCTGTTGTCCTCAAGTGTGGGGGTAACATCAGAACTGCTGCAACTGGACATTGCCCTTCATTTGAACCGGGAGATCATTTCCGCATATCAACTGATGCATCAAATTGGCATTCACAAGAAACAGAATATTATAGTGCAACACTGAAGAGTGTCATGCATCGAGAGGGTGACTCAGATCTTCTGCAAAGAAGATCAGAACAACCTGATGCAAGTTCATCCTTTGAGAATTTGGAGTCTCTTTCAACAGAAGTCGAGGAAGTGATTGGGATAATCACATTGGAAGATGTTATGGAAGAGTTACTTCAGGAAGATATATTGGATGAAACTGATCAATATGTTGATGTCCATCAAAATATCAGAATCAAACTAGAACATGCAAGAAGAGTGTCATCAGGGTCCTCCAGAAGGGCTTCAAGTACTCGTCAACAACGGAGAAGTTCAGATGCATCTCGAGTTTTTACATATGTTTCATCTGTTTCTCCATAAGCAAAAATGTTACCTCCCCTGATTCTCCTGAAGAATTTGTCCTAATTTTTTTTATGTCCCAAATAATTTTATCAAGTATTATGACATCATATTTTTATTCAAG
>Glyma09g24130.2 sequence type=CDS gene model=Glyma09g24130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCATATTTTGAGGAAAGAGCACCTTGTTGTGGAACTCACTTTTGGATTTTACTAAGCATGTGTTCGGCATTTGTGTTATTTGCTGCTATCACATCAGGTCTTTCTCTAGGACTCTTGTCCTTCAGCCAAGTTGATCTTGAGGTTCTTGTTAAAGCTGGGCAGCCTAAAATCCAGAAGAATGCAGCGAAAATTATGTCCATTGTCAAGAATGAGCATTTACTTTTATGCACCCTCCTCATAGCTAAATCAATGGCACTGGAGGGGGTTTCTGTTTTTTTGGAGAAAATGTTCCCAGAGTGGCTTTCTGTATTAATAGCAGCTACCATTTTGGGTTTGACCGCAGAGATTATCCCACAAGCCTTGTGTTCTCAATATGGTTTAAGTGTTGGGGCAGCAATGTCTCCCTTTGTTCGAGTTCTTATGATGGTTTTCTTCCCAATTGCATATCCACTTAGTAAGTTGTTGGATTGGCTTTTTGGCAAGGGGCATACTGCACTTCTAGGACGAGCAGAGCTGAAGACTTTAGTCCATTTACATGCTATTGAGGCAGGGAAAGGTGGAGAGTTGTCACTTCATGAAACTAGAATAATTGCTGGAGCTTTGGACTTGACACAGAAGACTGCTAAAGATGCTATGACTCCTATAAGTGAAACATTTTCTCTTGACATAAACTCCAAACTTGACATGCATACAATGGGCTTAATAATGAGCATAGGTCACAGCCGAATACCAGTCTACTCTGGAAAACAAACAAACATTGTTGGCATTATCTTGGTCAAGAATCTAATCTTCTGTCATCATGAAGATGAAATGCCAATTAAGTTTATGACTATCAGGAGAGTTCCTAGGGTTGGTGAAGATTGGCCACTATATGATATCCTGAATCAATTCAAGAAGGGTCAAAGCCACATGGCTGTTGTCCTCAAGTGTGGGGGTAACATCAGAACTGCTGCAACTGGTACAGAAGGACATTGCCCTTCATTTGAACCGGGAGATCATTTCCGCATATCAACTGATGCATCAAATTGGCATTCACAAGAAACAGAATATTATAGTGCAACACTGAAGAGTGTCATGCATCGAGAGGGTGACTCAGATCTTCTGCAAAGAAGATCAGAACAACCTGATGCAAGTTCATCCTTTGAGAATTTGGAGTCTCTTTCAACAGAAGTCGAGGAAGTGATTGGGATAATCACATTGGAAGATGTTATGGAAGAGTTACTTCAGGAAGATATATTGGATGAAACTGATCAATATGTTGATGTCCATCAAAATATCAGAATCAAACTAGAACATGCAAGAAGAGTGTCATCAGGGTCCTCCAGAAGGGCTTCAAGTACTCGTCAACAACGGAGAAGTTCAGATGCATCTCGAGTTTTTACATATGTTTCATCTGTTTCTCCATAA >Glyma09g24130.3 sequence type=CDS gene model=Glyma09g24130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCATATTTTGAGGAAAGAGCACCTTGTTGTGGAACTCACTTTTGGATTTTACTAAGCATGTGTTCGGCATTTGTGTTATTTGCTGCTATCACATCAGGTCTTTCTCTAGGACTCTTGTCCTTCAGCCAAGTTGATCTTGAGGTTCTTGTTAAAGCTGGGCAGCCTAAAATCCAGAAGAATGCAGCGAAAATTATGTCCATTGTCAAGAATGAGCATTTACTTTTATGCACCCTCCTCATAGCTAAATCAATGGCACTGGAGGGGGTTTCTGTTTTTTTGGAGAAAATGTTCCCAGAGTGGCTTTCTGTATTAATAGCAGCTACCATTTTGGGTTTGACCGCAGAGATTATCCCACAAGCCTTGTGTTCTCAATATGGTTTAAGTGTTGGGGCAGCAATGTCTCCCTTTGTTCGAGTTCTTATGATGGTTTTCTTCCCAATTGCATATCCACTTAGTAAGTTGTTGGATTGGCTTTTTGGCAAGGGGCATACTGCACTTCTAGGACGAGCAGAGCTGAAGACTTTAGTCCATTTACATGCTATTGAGGCAGGGAAAGGTGGAGAGTTGTCACTTCATGAAACTAGAATAATTGCTGGAGCTTTGGACTTGACACAGAAGACTGCTAAAGATGCTATGACTCCTATAAGTGAAACATTTTCTCTTGACATAAACTCCAAACTTGACATGCATACAATGGGCTTAATAATGAGCATAGGTCACAGCCGAATACCAGTCTACTCTGGAAAACAAACAAACATTGTTGGCATTATCTTGGTCAAGAATCTAATCTTCTGTCATCATGAAGATGAAATGCCAATTAAGTTTATGACTATCAGGAGAGTTCCTAGGGTTGGTGAAGATTGGCCACTATATGATATCCTGAATCAATTCAAGAAGGGTCAAAGCCACATGGCTGTTGTCCTCAAGTGTGGGGGTAACATCAGAACTGCTGCAACTGGACATTGCCCTTCATTTGAACCGGGAGATCATTTCCGCATATCAACTGATGCATCAAATTGGCATTCACAAGAAACAGAATATTATAGTGCAACACTGAAGAGTGTCATGCATCGAGAGGGTGACTCAGATCTTCTGCAAAGAAGATCAGAACAACCTGATGCAAGTTCATCCTTTGAGAATTTGGAGTCTCTTTCAACAGAAGTCGAGGAAGTGATTGGGATAATCACATTGGAAGATGTTATGGAAGAGTTACTTCAGGAAGATATATTGGATGAAACTGATCAATATGTTGATGTCCATCAAAATATCAGAATCAAACTAGAACATGCAAGAAGAGTGTCATCAGGGTCCTCCAGAAGGGCTTCAAGTACTCGTCAACAACGGAGAAGTTCAGATGCATCTCGAGTTTTTACATATGTTTCATCTGTTTCTCCATAA
>Glyma09g24130.2 sequence type=predicted peptide gene model=Glyma09g24130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSYFEERAPCCGTHFWILLSMCSAFVLFAAITSGLSLGLLSFSQVDLEVLVKAGQPKIQKNAAKIMSIVKNEHLLLCTLLIAKSMALEGVSVFLEKMFPEWLSVLIAATILGLTAEIIPQALCSQYGLSVGAAMSPFVRVLMMVFFPIAYPLSKLLDWLFGKGHTALLGRAELKTLVHLHAIEAGKGGELSLHETRIIAGALDLTQKTAKDAMTPISETFSLDINSKLDMHTMGLIMSIGHSRIPVYSGKQTNIVGIILVKNLIFCHHEDEMPIKFMTIRRVPRVGEDWPLYDILNQFKKGQSHMAVVLKCGGNIRTAATGTEGHCPSFEPGDHFRISTDASNWHSQETEYYSATLKSVMHREGDSDLLQRRSEQPDASSSFENLESLSTEVEEVIGIITLEDVMEELLQEDILDETDQYVDVHQNIRIKLEHARRVSSGSSRRASSTRQQRRSSDASRVFTYVSSVSP* >Glyma09g24130.3 sequence type=predicted peptide gene model=Glyma09g24130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSYFEERAPCCGTHFWILLSMCSAFVLFAAITSGLSLGLLSFSQVDLEVLVKAGQPKIQKNAAKIMSIVKNEHLLLCTLLIAKSMALEGVSVFLEKMFPEWLSVLIAATILGLTAEIIPQALCSQYGLSVGAAMSPFVRVLMMVFFPIAYPLSKLLDWLFGKGHTALLGRAELKTLVHLHAIEAGKGGELSLHETRIIAGALDLTQKTAKDAMTPISETFSLDINSKLDMHTMGLIMSIGHSRIPVYSGKQTNIVGIILVKNLIFCHHEDEMPIKFMTIRRVPRVGEDWPLYDILNQFKKGQSHMAVVLKCGGNIRTAATGHCPSFEPGDHFRISTDASNWHSQETEYYSATLKSVMHREGDSDLLQRRSEQPDASSSFENLESLSTEVEEVIGIITLEDVMEELLQEDILDETDQYVDVHQNIRIKLEHARRVSSGSSRRASSTRQQRRSSDASRVFTYVSSVSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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