SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11260 | AT | Annotation by Michelle Graham. TAIR10: phosphatase-related | chr4:6851515-6853719 REVERSE LENGTH=358 | SoyBase | E_val: 4.00E-159 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010187 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:2000072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1309 | KOG | Suppressor of G2 allele of skp1 | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF69 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| PF04969 | PFAM | CS domain | JGI | ISS | |
| PF05002 | PFAM | SGS domain | JGI | ISS | |
| UniRef100_B6EBD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SGT1-2 n=1 Tax=Glycine max RepID=B6EBD5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_B6EBD5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: SGT1-2 n=1 Tax=Glycine max RepID=B6EBD5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g23980 not represented in the dataset |
Glyma09g23980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g29450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g128800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g23980.1 sequence type=CDS gene model=Glyma09g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCGATCTCGAAGCAAAAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAACTCGCCGTGGACCTTCTCTCTCAGGCCATTCATCTCGAACCCAACAAAGCCGAATTCTACGCCGACCGCGCCCAAGCCAACATCAAACTCAACAACTTCACTGAGGCTGTGGCTGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTACCAAAAGCATATTTGCGGAAAGGTACTGCTTGCATGAAGCTTGAGGAATATGAAACTGCAAAGGCTGCTCTGGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATCAAAGAATGTGATAAGCTCATTGCAGAAGAATCTTATACCCCACCTATTATAGAGGAAAAGGCCACAACAGAAGATGTTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGGCATGAATTCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAAGAAAATCCCAAAGGAAAGCATTACTGTTGACTTCGGTGAACAAATACTAAGTGTTAGTATTAATGTCACAGGAGAAGACACATATGTTTTTCAACCTCGCTTATTTGGAAAGATCATACCTTCCAATTGTCAATATGAAGTTTTGTCCACCAAAATTGAAATTCGTCTTGCAAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCAGAGACATCGTTGTTCAACAGAGGGTTAATGCTTCTTCAGTTACTGGAAGTCAAAGACCTTCTTACCCATCCTCAAAACAAACAAGAGATTGGGACAAGATTGAAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGCGATGCTGCATTGAACAAATTTTTCCGCGAAATATATCAAGATGCAGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTTGAGTCTAATGGGACAGTTCTGTCTACAAACTGGAAAGAAGTGGGAACAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA
>Glyma09g23980.1 sequence type=predicted peptide gene model=Glyma09g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAEFYADRAQANIKLNNFTEAVADANKAIELNPSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEESYTPPIIEEKATTEDVTPKDVQQQDDLLEKPTVTVTKPKYRHEFYQKHDQVVVTIFAKKIPKESITVDFGEQILSVSINVTGEDTYVFQPRLFGKIIPSNCQYEVLSTKIEIRLAKAEPIHWTSLEFTRDIVVQQRVNASSVTGSQRPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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