Report for Sequence Feature Glyma09g23220
Feature Type: gene_model
Chromosome: Gm09
Start: 28583452
stop: 28588191
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g23220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24030 AT
Annotation by Michelle Graham. TAIR10: SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635
SoyBase E_val: 0 ISS
GO:0006598 GO-bp
Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process
SoyBase N/A ISS
GO:0006873 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular ion homeostasis
SoyBase N/A ISS
GO:0009698 GO-bp
Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0042398 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
PF03595 PFAM
C4-dicarboxylate transporter/malic acid transport protein
JGI ISS
UniRef100_G7KJM6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Medicago truncatula RepID=G7KJM6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MPD1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MPD1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g23220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g23220
Paralog Evidence Comments
Glyma16g29030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g23220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g126900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g23220
Coding sequences of Glyma09g23220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g23220.2 sequence type=CDS gene model=Glyma09g23220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAACAACATAAACATTGAAATTTCAGAACAAGGCTCTCCAGAAGTTCCATCACTCATAAGGTATATATCATCAAGTGAAGTTGCTGGCTTTGACACTGCTGATTCTCAACTTCCCAGCGCATCTGCCCAAGGAAGTGAAGCAAACTCACCAACAAGACAACATGATGAACCTATAGTCATCAATCATCAAAGGAAGTATTCTATCAGCATGCCACTTTCTTCTGAAGAAGTTCAGCTTCAACCAATGGACACCAAAAAAGATGGTATTCCCATTTCCTCTTCTCAATCAGGAACTGCTAGCTCTAACCATCCGCAGGCATCAAAATGTTACTCTCAACCAATGCCAAAATGCCATGTGCCCCAAGAGGCTGATAATGGAGTCAAAATAAATAACCATCCGGGCATCAAAGATTTCAAGGATAAGAGGTTTGACTCTTTTAAAACATGGTCTGGGAGACTTGAGAGACAATTAACAATTCTACGTGGAAAGTCACCAAGAGCAACTGCACAAGATGGTAACAACAACTCCAAGAGCACTGATAGGCCTTTACCTGTGGATCGGTACTTTGATGCATTGGAAGGTCCAGAGTTAGAAACTCTCAAGGCATCAGAAGAGACAGTGCTTCCACAGGACAAGCAATGGCCATTTCTTCTACGGTTTCCTATTTCATCCTTTGGTATTTGCCTTGGAGTTAGCAGCCAAGCAATTCTTTGGAAAGCACTGGCAACATCTCCTTCCACTCAATTTCTTCACATAAGCCTCAAAGTCAACTTAATCTTATGGTTCATATCCATTGCTCTTGTTATCACAGTTTTCACCATCTATCTTCTCAAAATCATTCTCTACTTTGAAGCAGTTCATCGGGAGTACTACCATCCGATCCGTGTCAACTTCTTCTTTGCACCATGGATAGCTCTCTTGTTCTTGGCTATTGGAGTTCCACCATCAGTTACCAAAGACCTGCACCATGCTCCTTGGTACATTCTAATGACACCAATATTGTGTCTTGAACTTAAGATCTATGGACAGTGGATGTCTGGGGGTCAAAGGAGGCTCTCAAAGGTGGCTAATCCTACCAACCATTTATCAATTGTTGGAAACTTTGTGGGGGCATTACTTGGGGCCTCTATGGGCCTCAAAGAAGGGCCCATTTTCTTCTTTGCTATTGGGCTGGCCCACTACATAGTCATGTTTGTGACCCTCTACCAGAGACTTCCAACAAATGAGACACTCCCAAAAGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCAAGTGTTGCTTCCATGGCTTGGGCCAACATTCAGGGTTCCTTCGATTATGGATCTCGGATTGCCTATTTCATTGCCCTCTTTCTTTATTTCTCATTGGCTGTCCGGATCAATTTTTTCAGAGGATTCATATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTAAGATACTCAAATCAGGTCACAAATCCAGTTACCAAGACCCTGTGTGTCATACTGAGTCTCATATCCACACTCATAGTAATAGCACTGCTTGTATCAACTATATTGCATGCCTTTGTCTTCAAAAACCTATTCCCCAATGACCTTGCCATTGCCATAAGTTACAGAAAGAGAAGGCCACAAAAGAAGTGGCTAGGTCTTAGATACAGGAGCCATGACTCCAAAGAGATCGAAAATTACCTGAAGTGTGTGAACTCGGATAAAATTGATTTAGAAGCTTCTACCCCACTACCAGATGGCACAGAGGATTCACCATCTATCTGA
Predicted protein sequences of Glyma09g23220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g23220.2 sequence type=predicted peptide gene model=Glyma09g23220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENNINIEISEQGSPEVPSLIRYISSSEVAGFDTADSQLPSASAQGSEANSPTRQHDEPIVINHQRKYSISMPLSSEEVQLQPMDTKKDGIPISSSQSGTASSNHPQASKCYSQPMPKCHVPQEADNGVKINNHPGIKDFKDKRFDSFKTWSGRLERQLTILRGKSPRATAQDGNNNSKSTDRPLPVDRYFDALEGPELETLKASEETVLPQDKQWPFLLRFPISSFGICLGVSSQAILWKALATSPSTQFLHISLKVNLILWFISIALVITVFTIYLLKIILYFEAVHREYYHPIRVNFFFAPWIALLFLAIGVPPSVTKDLHHAPWYILMTPILCLELKIYGQWMSGGQRRLSKVANPTNHLSIVGNFVGALLGASMGLKEGPIFFFAIGLAHYIVMFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWANIQGSFDYGSRIAYFIALFLYFSLAVRINFFRGFIFSLAWWAYTFPMTGAAIATVRYSNQVTNPVTKTLCVILSLISTLIVIALLVSTILHAFVFKNLFPNDLAIAISYRKRRPQKKWLGLRYRSHDSKEIENYLKCVNSDKIDLEASTPLPDGTEDSPSI*