Glyma09g22270 - SoyBase

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Report for Sequence Feature Glyma09g22270

Feature Type:	gene_model
Chromosome:	Gm09
Start:	27457395
stop:	27460977
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g22270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17860	AT	Annotation by Michelle Graham. TAIR10: jasmonate-zim-domain protein 3 \| chr3:6119968-6122691 FORWARD LENGTH=352	SoyBase	E_val: 1.00E-34	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PF06200	PFAM	tify domain	JGI		ISS
PF09425	PFAM	Divergent CCT motif	JGI		ISS
UniRef100_G8A016	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Jasmonate Zim-domain protein n=1 Tax=Medicago truncatula RepID=G8A016_MEDTR	SoyBase	E_val: 1.00E-115	ISS
UniRef100_I1L2W4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2W4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g22270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g22270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g123600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g22270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g22270

Limit To All Plant Sequences

>Glyma09g22270.1   sequence type=CDS   gene model=Glyma09g22270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGATTTTCTGGGTCTGAGCTCAAAAGAACCATTGGCTATGATGAAGGAAGAGATGAATATTGATATTGGAAGCAAAGACACAGGTTTCACAAATGGAGCAGTGGTAAAATGGCCCTTCATGAACAAAGTATATGTCCATCCTCTTTTGATGTCATTCAATCCTCCTCAGGTGAATTCTGTGAACCATCCTCATGGTATGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCATGGGACATCCATCCCTAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGTTGCTACTGTGAAGCAACCACTACTCGGAGGAATACCTGTTACGGTGCCTCATTCAGTTCATCCCATTGTTGGTGCTGTTGCTGGAATGACCGAAACACGCGTGAAACCATCCGTACCTGCTCCTAAACTTACAATCTTCTATGCGGGCACTGTGAATGTCTTTGAAGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCAGCTGGTTCTAATGAGGCATCACCCAATGTTCAGGCGCCCTGCTTGAAGTTGGCAGTAGGTGATGGTGTGCCTGTTAGTCAACCCATACCACCCTGCTCCGGTCTTTCAAGTCCTTCATCTGTTTCTTCACATACTGGTTCACCGTCAGGGAGTGGTTCAAGTAGCAATGATGAGTTTCTCGCAGCTAAAACATCTGGAGGTACCACTTCCTCTGTTAACAAAGTGGAGACTCCGAAAGTAGTCAACACAACTACCATGCTAACATCAGCTGTGCCACAGGCTCGCAAGGCATCATTAGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAGAAGTCTGAGAATGTGCCACAGCAGAATACAATGGTTTCTAACATCACTGCAAGCGCAGGAGATTACTTCAGATAA

Predicted protein sequences of Glyma09g22270

Limit To All Plant Sequences

>Glyma09g22270.1   sequence type=predicted peptide   gene model=Glyma09g22270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERDFLGLSSKEPLAMMKEEMNIDIGSKDTGFTNGAVVKWPFMNKVYVHPLLMSFNPPQVNSVNHPHGMKMFSVPNQAISVSMGHPSLKNHFATVGQNMNVATVKQPLLGGIPVTVPHSVHPIVGAVAGMTETRVKPSVPAPKLTIFYAGTVNVFEDISPEKAQAIMLLAGNGLSAGSNEASPNVQAPCLKLAVGDGVPVSQPIPPCSGLSSPSSVSSHTGSPSGSGSSSNDEFLAAKTSGGTTSSVNKVETPKVVNTTTMLTSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSENVPQQNTMVSNITASAGDYFR*

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