SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10240 | AT | Annotation by Michelle Graham. TAIR10: FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680 | SoyBase | E_val: 1.00E-71 | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF03101 | PFAM | FAR1 DNA-binding domain | JGI | ISS | |
| PF10551 | PFAM | MULE transposase domain | JGI | ISS | |
| UniRef100_I1L2V5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L2V5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SY66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 11 n=1 Tax=Arabidopsis thaliana RepID=FRS11_ARATH | SoyBase | E_val: 7.00E-69 | ISS |
|
Glyma09g21805 not represented in the dataset |
Glyma09g21805 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g121900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g21805.1 sequence type=CDS gene model=Glyma09g21805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAAGGAGGACTTGGCGGCGTGGGCGTGGAGCAAGGTGGCGAGGAGGTGAGGGTTGAGAGGGAGGAGAAGTGTATGGAAGCTTCTAGGGCACGAGGAGCAAAGAAAGAGAATGGAATTCTCAGCGTCAAAGTAAAAAGTGGTGGTTTTTCAATTAGAAGTGATCATGTTTTCAAATGTAGTAAAAGTGAGAATGAGAAGAACCCATCAGGTGTTTATAAAAGGGAGTTTGTTTGCCATCGTGCAGGCAATGCTAAACATCACAAAGTTATTGAATTAGAAAGAAAAAGGAAACAAAAAAGTTTAAAATGTAATTGTAGTGCAAAAATGTGGATTGCTAAAAGAAAAATTGAGGTTCAGTATCTTCCTGCTTATCATGACATCCCTGCTGATGATCATAATCGTATATTATTGTTGTCAAAGGTTTGTTGTCTCGTAAGTCTCATAATAAAAGTTCTTGAGTTAGAGAAAGGAATAGATGCAGACAATCTATCATTTTTAGAGAAAGATATTAAGAATTTTATTCAATCTCAACATAGTATTGAAGAAGAGAATGAAGGTACTGAGGTTCTCAAATTATGCAAAAGTTTGAAAGACAAGGATGATGCCTTCCAATATGATTTCACATTAGATGAAAACAATAAATTGGAGCATATTATTTGGGTATTTGGTGATTCAATTCGAGCATATGAAGCTTTTGGAGATGCGGTCATCTTTGATACCACATATGGAATTAATCGTTATGATATGCCTCATGGACTATGGATTGGGAGTTTTATGTCTTTTGTTAAAGGAAAATGTCTTCAAACAATTCTTACAGATGAAGATCTTGCACTTGAAGAAGCCATTTCAACGGAGTTTCCAAACACAAAACATGCATTTTGCATATGGCATATTGTGGCAAAATTATCAACTTGGTTCTCTTTTCCTTTGGGTTCAAGATATAACGAATTCAAATATGAGTTCCATAGGTTATATAATTTAGAATGTGCAGTTGATTTTGAAAACAATGGGAAAAATCAAGCTGGAGAAGAGGCACGAATGCGGAAAAAGTACCATAATCCTTCAATTAGAACAAGTTTTCCTATTGAGGAACATGTTGCAACTATACTTACACCTTATGCCTTTGAGTTGCTACAACATGAAATTGAGTTATCTACAAAATATGCAGCAACTAAAACTAAAGTTAAATGTTTAAAGACAAAAGATCGAGTTGAAGTTGTTGTGAAAGAGTTAAAGAGAATTATTGAGTTGGTAAAAGGCATGCCTGAAGTTCAAGAAGACTCCATTGAGTTGGAACATTTTGCTCCAAATGATAATGAGTGTGATGTTAAAAATTTCATGATATCTAAAACAAAAGGTTGCCCAAGAGGGTCAAGGCCAAAAGGAGGAGTTGAAGTTGCAAAAAATTCTGGTCGTTGTCATATTCCTAATTATGATGGGACTAATCATGACTCACAAAATTGTCCAAACAAAAAGAAAAATGTTGAAAATTTGTCTTCTCAATCTTCAACTAAGATAGCAAAGGGTTGGAAAAGTAGTCTAAAAGAGGATGTGCACCAGTCAATGGATGAGTTGAAAGAGTACTTCAGTTTGTTTTGTGATTAA
>Glyma09g21805.1 sequence type=predicted peptide gene model=Glyma09g21805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEGGLGGVGVEQGGEEVRVEREEKCMEASRARGAKKENGILSVKVKSGGFSIRSDHVFKCSKSENEKNPSGVYKREFVCHRAGNAKHHKVIELERKRKQKSLKCNCSAKMWIAKRKIEVQYLPAYHDIPADDHNRILLLSKVCCLVSLIIKVLELEKGIDADNLSFLEKDIKNFIQSQHSIEEENEGTEVLKLCKSLKDKDDAFQYDFTLDENNKLEHIIWVFGDSIRAYEAFGDAVIFDTTYGINRYDMPHGLWIGSFMSFVKGKCLQTILTDEDLALEEAISTEFPNTKHAFCIWHIVAKLSTWFSFPLGSRYNEFKYEFHRLYNLECAVDFENNGKNQAGEEARMRKKYHNPSIRTSFPIEEHVATILTPYAFELLQHEIELSTKYAATKTKVKCLKTKDRVEVVVKELKRIIELVKGMPEVQEDSIELEHFAPNDNECDVKNFMISKTKGCPRGSRPKGGVEVAKNSGRCHIPNYDGTNHDSQNCPNKKKNVENLSSQSSTKIAKGWKSSLKEDVHQSMDELKEYFSLFCD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
