Glyma09g20990 - SoyBase

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Report for Sequence Feature Glyma09g20990

Feature Type:	gene_model
Chromosome:	Gm09
Start:	25818629
stop:	25822545
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g20990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43630	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). \| chr2	SoyBase	E_val: 6.00E-58	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7LDX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid carboxyl methyltransferase n=1 Tax=Medicago truncatula RepID=G7LDX3_MEDTR	SoyBase	E_val: 1.00E-33	ISS
UniRef100_I1L2S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L2S8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g20990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g20990 not represented in the dataset	Glyma09g20990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g20990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g118100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g20990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g20990

Limit To All Plant Sequences

>Glyma09g20990.2   sequence type=transcript   gene model=Glyma09g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGCATCTTCATATTTCAAAACTTTTGCGAAATTTCTCTCTTCTTCATCTTGCTCTTACATTCTGCTGGCAAGTTGCTGAGGGTGGCTTTTTCTATTTTTTGAAAATTATTGAAGAAAATGATGCTGGAGATATGTCATTATGTGTCATTGCATGTGTAGTAGTGTGATAGGGTAATGTTTGAAACTTGGGGGTAGCTAAGCTGTTTGACAAAAATGAATATTGCACAAGTTACAGCATGGCAGCCTGGGATTTGTGTGAAAAATATATCTCAGTTACACAGGCTTCAATCAAAACCATGTGTTTTACCAAATAGTTTTGGTCCTTGCTTACAAAGCTTAAGAGCAACACAATCGGTTAGCTCAAAATGTTGGCCCAGTTTACAATCTCGGAAACCTCTTCATATTTGCTTAGCCCGTGGAAAAGGGATGATGGGAAATGATGATGAGAATTCCCCATGGAAATTTATTGAGAAAGCTATAGGAAAATTTAAGGGAGAATCATCACTAGAGGATGTATTACGGAGCCAAATTGAAAAGGGTGAATATTATGACAGTGGTGGTGGTGGTGGAGTGAAACCACCAGGAGGCGGCAACACTGGTGGTGGTGGTGGTGGCCCTGATGGCTCTGGTGAATCAGAAGAAGAAAGCCTAGCTGGGATGTGGGAAGAAAATATCCAAATGATTTTAGCCACCCTTGGCTTTATATTTCTGTACATTTATATTCTCACCGGGGAGGAACTCACAAAGCTAGCTAGAGACTATATCAAGTATCTATTCGGCGGAAGTCAGAGTGTTCGACTGAAGAATGCCATGCATCAATGGGGACAACTCTATGAAAGCATGACGGCACAGCAAGAAGAGGAAGATGAGTATTGGTTGGAGAAGGCCATTCTGGATACTCCAACTTGGTGGCACGACCCTGCCGATTACCGTGAAGCCCTTAAAAATTACTTGCTATCAGGTACAGATGAGGCCATTGCCGCTAGGAATTACTTGGAATTAGATTCAGATGCAGACGTTAGGTATTGCTTGGAATCAGATGACGAAGAAGATGAAGAAGATGAATATCAATATAAAGATGATTATGAAGAAAAGTTTGCCTAGACTACGGAGCAGCCTCTATTGCCCTTCATCTATTTTCCCCTCAAGTTTGATGAAGCTATGTATACGTTGTATCTTCCTGGTTGTAGTGTATTGCCCTTTCTTGCATTTGTTTTTCCCCACAATACTAATGGTTTGAACAGCAATTAGACTTCTATATGAACTGAAGTTGTTTCTCTATAAGTATTTGGAGTCCATTTATTATCATTCATTGTGCTAATTTTTTCTCAATAGAACCATCACTTGTTTAGT

Coding sequences of Glyma09g20990

Limit To All Plant Sequences

>Glyma09g20990.1   sequence type=CDS   gene model=Glyma09g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATTGCACAAGTTACAGCATGGCAGCCTGGGATTTGTGTGAAAAATATATCTCAGTTACACAGGCTTCAATCAAAACCATGTGTTTTACCAAATAGTTTTGGTCCTTGCTTACAAAGCTTAAGAGCAACACAATCGGTTAGCTCAAAATGTTGGCCCAGTTTACAATCTCGGAAACCTCTTCATATTTGCTTAGCCCGTGGAAAAGGGATGATGGGAAATGATGATGAGAATTCCCCATGGAAATTTATTGAGAAAGCTATAGGAAAATTTAAGGGAGAATCATCACTAGAGGATGTATTACGGAGCCAAATTGAAAAGGGTGAATATTATGACAGTGGTGGTGGTGGTGGAGTGAAACCACCAGGAGGCGGCAACACTGGTGGTGGTGGTGGTGGCCCTGATGGCTCTGGTGAATCAGAAGAAGAAAGCCTAGCTGGGATGTGGGAAGAAAATATCCAAATGATTTTAGCCACCCTTGGCTTTATATTTCTGTACATTTATATTCTCACCGGGGAGGAACTCACAAAGCTAGCTAGAGACTATATCAAGTATCTATTCGGCGGAAGTCAGAGTGTTCGACTGAAGAATGCCATGCATCAATGGGGACAACTCTATGAAAGCATGACGGCACAGCAAGAAGAGGAAGATGAGTATTGGTTGGAGAAGGCCATTCTGGATACTCCAACTTGGTGGCACGACCCTGCCGATTACCGTGAAGCCCTTAAAAATTACTTGCTATCAGGTACAGATGAGGCCATTGCCGCTAGGAATTACTTGGAATTAGATTCAGATGCAGACGTTAGGTATTGCTTGGAATCAGATGACGAAGAAGATGAAGAAGATGAATATCAATATAAAGATGATTATGAAGAAAAGTTTGCCTAG

>Glyma09g20990.2   sequence type=CDS   gene model=Glyma09g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATTGCACAAGTTACAGCATGGCAGCCTGGGATTTGTGTGAAAAATATATCTCAGTTACACAGGCTTCAATCAAAACCATGTGTTTTACCAAATAGTTTTGGTCCTTGCTTACAAAGCTTAAGAGCAACACAATCGGTTAGCTCAAAATGTTGGCCCAGTTTACAATCTCGGAAACCTCTTCATATTTGCTTAGCCCGTGGAAAAGGGATGATGGGAAATGATGATGAGAATTCCCCATGGAAATTTATTGAGAAAGCTATAGGAAAATTTAAGGGAGAATCATCACTAGAGGATGTATTACGGAGCCAAATTGAAAAGGGTGAATATTATGACAGTGGTGGTGGTGGTGGAGTGAAACCACCAGGAGGCGGCAACACTGGTGGTGGTGGTGGTGGCCCTGATGGCTCTGGTGAATCAGAAGAAGAAAGCCTAGCTGGGATGTGGGAAGAAAATATCCAAATGATTTTAGCCACCCTTGGCTTTATATTTCTGTACATTTATATTCTCACCGGGGAGGAACTCACAAAGCTAGCTAGAGACTATATCAAGTATCTATTCGGCGGAAGTCAGAGTGTTCGACTGAAGAATGCCATGCATCAATGGGGACAACTCTATGAAAGCATGACGGCACAGCAAGAAGAGGAAGATGAGTATTGGTTGGAGAAGGCCATTCTGGATACTCCAACTTGGTGGCACGACCCTGCCGATTACCGTGAAGCCCTTAAAAATTACTTGCTATCAGGTACAGATGAGGCCATTGCCGCTAGGAATTACTTGGAATTAGATTCAGATGCAGACGTTAGGTATTGCTTGGAATCAGATGACGAAGAAGATGAAGAAGATGAATATCAATATAAAGATGATTATGAAGAAAAGTTTGCCTAG

Predicted protein sequences of Glyma09g20990

Limit To All Plant Sequences

>Glyma09g20990.1   sequence type=predicted peptide   gene model=Glyma09g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIAQVTAWQPGICVKNISQLHRLQSKPCVLPNSFGPCLQSLRATQSVSSKCWPSLQSRKPLHICLARGKGMMGNDDENSPWKFIEKAIGKFKGESSLEDVLRSQIEKGEYYDSGGGGGVKPPGGGNTGGGGGGPDGSGESEEESLAGMWEENIQMILATLGFIFLYIYILTGEELTKLARDYIKYLFGGSQSVRLKNAMHQWGQLYESMTAQQEEEDEYWLEKAILDTPTWWHDPADYREALKNYLLSGTDEAIAARNYLELDSDADVRYCLESDDEEDEEDEYQYKDDYEEKFA*

>Glyma09g20990.2   sequence type=predicted peptide   gene model=Glyma09g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIAQVTAWQPGICVKNISQLHRLQSKPCVLPNSFGPCLQSLRATQSVSSKCWPSLQSRKPLHICLARGKGMMGNDDENSPWKFIEKAIGKFKGESSLEDVLRSQIEKGEYYDSGGGGGVKPPGGGNTGGGGGGPDGSGESEEESLAGMWEENIQMILATLGFIFLYIYILTGEELTKLARDYIKYLFGGSQSVRLKNAMHQWGQLYESMTAQQEEEDEYWLEKAILDTPTWWHDPADYREALKNYLLSGTDEAIAARNYLELDSDADVRYCLESDDEEDEEDEYQYKDDYEEKFA*

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