Glyma09g19800 - SoyBase

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Report for Sequence Feature Glyma09g19800

Feature Type:	gene_model
Chromosome:	Gm09
Start:	24583631
stop:	24585159
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g19800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18465	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr2:8003223-8004742 REVERSE LENGTH=268	SoyBase	E_val: 8.00E-24	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF66	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9S885	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S885_RICCO	SoyBase	E_val: 8.00E-41	ISS
UniRef100_UPI0002338146	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338146 related cluster n=1 Tax=unknown RepID=UPI0002338146	SoyBase	E_val: 9.00E-82	ISS

Expression Patterns of Glyma09g19800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g19800 not represented in the dataset	Glyma09g19800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g19800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g116800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g19800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g19800

Limit To All Plant Sequences

>Glyma09g19800.3   sequence type=transcript   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAGAAGAGAATGTTTCTTCGAGGACTTTGACGGCCATGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGAAGTTCTTCCTCTGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATAGGACAAACAAGTGGAAAAATGAAAGTGATACTGAGCATGAAGATGATGACTCATGTTGTGAAGGATCAAGTTCTGATAGGACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTATCCGGTTATCGGCTTTAAAATGGCATCCTGATAAGCATCAGGGCCCTTCCCAGGCAATGGCTGAAGAAAAATTCAAACTGTGTGTAAATGCATACAAAACATTATGCAATGCTCTCTCCCCATCTTAGGTGGCTTGTTACAGCTTCAAGTCAGTAAAGATATCCATCACAATTGATCAATGTAG

>Glyma09g19800.4   sequence type=transcript   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAGAAGAGAATGTTTCTTCGAGGACTTTGACGGCCATGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGAAGTTCTTCCTCTGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATAGGACAAACAAGTGGAAAAATGAAAGTGATACTGAGCATGAAGATGATGACTCATGTTGTGAAGGATCAAGTTCTGATAGGACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTATCCGGTTATCGGCTTTAAAATGGCATCCTGATAAGCATCAGGGCCCTTCCCAGGCAGCTCTGATGGTCAATGGTTTTCAATGTTTGCAAAGGGACAACTGAAAATTTATTTCATATATGAAGGATGAATGACAAATATAGGTTATACTCTGAATAGCGAATTGTAAAAAATTATATCAGGCAATGGCTGAAGAAAAATTCAAACTGTGTGTAAATGCATACAAAACATTATGCAATGCTCTCTCCCCATCTTAGGTGGCTTGTTACAGCTTCAAGTCAGTAAAGATATCCATCACAATTGATCAATGTAG

Coding sequences of Glyma09g19800

Limit To All Plant Sequences

>Glyma09g19800.2   sequence type=CDS   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAGAAGAGAATGTTTCTTCGAGGACTTTGACGGCCATGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGAAGTTCTTCCTCTGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATAGGACAAACAAGTGGAAAAATGAAAGTGATACTGAGCATGAAGATGATGACTCATGTTGTGAAGGATCAAGTTCTGATAGGACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTATCCGGTTATCGGCTTTAAAATGGCATCCTGATAAGCATCAGGGCCCTTCCCAGGTTGACAGCCAACCCACCCTACTCGAAACTCAGTATCACCTACAAACTGTCTTCTTGGATGTAGGTGTAAAGTATAATCCATCCAGAACTACCATGTGTGTTGACCCTCTTGATGAATAA

>Glyma09g19800.3   sequence type=CDS   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAGAAGAGAATGTTTCTTCGAGGACTTTGACGGCCATGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGAAGTTCTTCCTCTGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATAGGACAAACAAGTGGAAAAATGAAAGTGATACTGAGCATGAAGATGATGACTCATGTTGTGAAGGATCAAGTTCTGATAGGACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTATCCGGTTATCGGCTTTAAAATGGCATCCTGATAAGCATCAGGGCCCTTCCCAGGCAATGGCTGAAGAAAAATTCAAACTGTGTGTAAATGCATACAAAACATTATGCAATGCTCTCTCCCCATCTTAG

>Glyma09g19800.4   sequence type=CDS   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAGAAGAGAATGTTTCTTCGAGGACTTTGACGGCCATGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGAAGTTCTTCCTCTGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATAGGACAAACAAGTGGAAAAATGAAAGTGATACTGAGCATGAAGATGATGACTCATGTTGTGAAGGATCAAGTTCTGATAGGACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTATCCGGTTATCGGCTTTAAAATGGCATCCTGATAAGCATCAGGGCCCTTCCCAGGCAGCTCTGATGGTCAATGGTTTTCAATGTTTGCAAAGGGACAACTGA

Predicted protein sequences of Glyma09g19800

Limit To All Plant Sequences

>Glyma09g19800.2   sequence type=predicted peptide   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KIRRECFFEDFDGHEQIFQATFGNKWYTWSFNNWRSSSSEHSTSGFEWREHSNRTNKWKNESDTEHEDDDSCCEGSSSDRTVLGLPPTGPLKIEDVKNAIRLSALKWHPDKHQGPSQVDSQPTLLETQYHLQTVFLDVGVKYNPSRTTMCVDPLDE*

>Glyma09g19800.3   sequence type=predicted peptide   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KIRRECFFEDFDGHEQIFQATFGNKWYTWSFNNWRSSSSEHSTSGFEWREHSNRTNKWKNESDTEHEDDDSCCEGSSSDRTVLGLPPTGPLKIEDVKNAIRLSALKWHPDKHQGPSQAMAEEKFKLCVNAYKTLCNALSPS*

>Glyma09g19800.4   sequence type=predicted peptide   gene model=Glyma09g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KIRRECFFEDFDGHEQIFQATFGNKWYTWSFNNWRSSSSEHSTSGFEWREHSNRTNKWKNESDTEHEDDDSCCEGSSSDRTVLGLPPTGPLKIEDVKNAIRLSALKWHPDKHQGPSQAALMVNGFQCLQRDN*

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